Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20234
(575 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 178 3e-45
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 178 3e-45
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 178 3e-45
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 149 2e-36
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 116 9e-27
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 116 9e-27
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 102 2e-22
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 95 4e-20
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 3e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 3e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 65 4e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 65 4e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 65 4e-11
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 0.001
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 39 0.002
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 39 0.003
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.083
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.083
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.19
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.19
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 31 0.59
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.78
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.4
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical pr... 28 5.5
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 28 5.5
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 5.5
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 5.5
Z98866-25|CAL22710.1| 325|Caenorhabditis elegans Hypothetical p... 27 9.5
Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical pr... 27 9.5
AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear recep... 27 9.5
AF273812-1|AAG15161.1| 225|Caenorhabditis elegans nuclear recep... 27 9.5
AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear recep... 27 9.5
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 178 bits (433), Expect = 3e-45
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS
Sbjct: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 108 QADCAVLVVACGTGEFEAGISKNGQ 132
Score = 102 bits (244), Expect = 2e-22
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLI 558
TREHALLA TLGVKQL+
Sbjct: 133 TREHALLAQTLGVKQLV 149
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 178 bits (433), Expect = 3e-45
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS
Sbjct: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 108 QADCAVLVVACGTGEFEAGISKNGQ 132
Score = 102 bits (244), Expect = 2e-22
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLA TLGVKQLIV NK
Sbjct: 133 TREHALLAQTLGVKQLIVACNK 154
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 178 bits (433), Expect = 3e-45
Identities = 81/85 (95%), Positives = 84/85 (98%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS
Sbjct: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 108 QADCAVLVVACGTGEFEAGISKNGQ 132
Score = 102 bits (244), Expect = 2e-22
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLA TLGVKQLIV NK
Sbjct: 133 TREHALLAQTLGVKQLIVACNK 154
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 149 bits (360), Expect = 2e-36
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS
Sbjct: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVA 463
QADCAVL+VA
Sbjct: 108 QADCAVLVVA 117
Score = 102 bits (244), Expect = 2e-22
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 116 bits (280), Expect = 9e-27
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = +2
Query: 260 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 439
GK SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQA
Sbjct: 213 GKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQA 272
Query: 440 DCAVLIVAAGTGEFEAGISKNGQ 508
D A+L+V A TGEFE G GQ
Sbjct: 273 DAAILVVNATTGEFETGFENGGQ 295
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +3
Query: 123 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQK 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA +
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAAR 211
Score = 33.9 bits (74), Expect = 0.083
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
T+EHALL +LGV QLIV VNK
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNK 317
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 116 bits (280), Expect = 9e-27
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = +2
Query: 260 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 439
GK SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQA
Sbjct: 231 GKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQA 290
Query: 440 DCAVLIVAAGTGEFEAGISKNGQ 508
D A+L+V A TGEFE G GQ
Sbjct: 291 DAAILVVNATTGEFETGFENGGQ 313
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +3
Query: 123 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQK 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA +
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAAR 229
Score = 33.9 bits (74), Expect = 0.083
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
T+EHALL +LGV QLIV VNK
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNK 335
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 102 bits (244), Expect = 2e-22
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAER 313
EMGKGSFKYAWVLDKLK +
Sbjct: 48 EMGKGSFKYAWVLDKLKVTK 67
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 94.7 bits (225), Expect = 4e-20
Identities = 44/97 (45%), Positives = 62/97 (63%)
Frame = +2
Query: 218 QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 397
+ Y RE +E G E S+ +W +D ERE+G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRE----SWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 398 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 508
+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +3
Query: 117 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQK 257
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA++
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKE 150
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREH++L T GVK L++ VNK
Sbjct: 235 TREHSMLVKTAGVKHLVILVNK 256
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 68.5 bits (160), Expect = 3e-12
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 470 TGEFE 484
G E
Sbjct: 143 DGVME 147
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 126 KTHINIVVIGHVDSGKSTTT 185
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 68.5 bits (160), Expect = 3e-12
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 470 TGEFE 484
G E
Sbjct: 143 DGVME 147
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 126 KTHINIVVIGHVDSGKSTTT 185
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.9 bits (151), Expect = 4e-11
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 470 TG 475
G
Sbjct: 147 DG 148
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 120 KEKTHINIVVIGHVDSGKSTTT 185
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.9 bits (151), Expect = 4e-11
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 470 TG 475
G
Sbjct: 148 DG 149
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 120 KEKTHINIVVIGHVDSGKSTTT 185
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.9 bits (151), Expect = 4e-11
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 470 TG 475
G
Sbjct: 148 DG 149
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 120 KEKTHINIVVIGHVDSGKSTTT 185
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +2
Query: 287 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
+LDKL+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 467 GTG 475
G
Sbjct: 136 NQG 138
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQKWV 263
N ++ HVD GKST L+ CG + K+ ++K + E ++ +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERERGI 88
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 287 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
V D L ERERGIT+ A + + + +ID PGH DF + D V+++
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDG 123
Query: 467 GTG 475
G
Sbjct: 124 SAG 126
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGI 215
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 GGPEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMI 421
G + GK + A ++ A GIT I + E +K VT +D PGH F
Sbjct: 163 GHVDHGKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRA 222
Query: 422 TGTSQADCAVLIVAAGTG 475
G AD VL+VAA G
Sbjct: 223 RGAKGADIVVLVVAADDG 240
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D + ER+RGITI A + + IID PGH DF + D AVL++ G
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CG 145
Query: 470 TG 475
G
Sbjct: 146 VG 147
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGID 218
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.083
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +2
Query: 251 PEMGKGSFKYAWVLDKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKN 415
PE + A D L E++RG +I I + Y + IID PGH +F
Sbjct: 158 PEFYRAEDADARFTDILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDE 217
Query: 416 MITGTSQADCAVLIVAAGTG 475
M AD V++V A G
Sbjct: 218 MTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.9 bits (74), Expect = 0.083
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +2
Query: 251 PEMGKGSFKYAWVLDKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKN 415
PE + A D L E++RG +I I + Y + IID PGH +F
Sbjct: 33 PEFYRAEDADARFTDILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDE 92
Query: 416 MITGTSQADCAVLIVAAGTG 475
M AD V++V A G
Sbjct: 93 MTASYRLADGVVVMVDAHEG 112
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 460
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 460
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 209
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 326 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 475
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 209
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 326 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 475
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 31.1 bits (67), Expect = 0.59
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVKDPSNMLGYWTN 299
+I+ GH+D S GH +K GI E FE E ++ + P+ GY T+
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATS 1685
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.78
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 368 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 463
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 377 IIDAPGHRDFIKNMITGTSQADCAVLIV 460
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 135 INIVVIGHVDSGKSTTT 185
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 371 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 475
+ +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 135 INIVVIGHVDSGKSTTT 185
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 371 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 466
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical
protein F11A3.1 protein.
Length = 544
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 111 LVSGVMGILISLFHFTKQFFLTLTTDYKLRVISELVP 1
L+ G+ GI++S HF FLT +YK+R + LVP
Sbjct: 257 LLKGMTGIVMS--HFEPNNFLTAVQNYKVRCLC-LVP 290
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 111 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKW 260
+MG KT I +IG++ K+ + HL+ + K T++ + E +KW
Sbjct: 158 EMGLGKTLQTISMIGYMKHYKNKASPHLVI----VPKSTLQNWANEFKKW 203
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 108 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 200
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 108 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 200
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z98866-25|CAL22710.1| 325|Caenorhabditis elegans Hypothetical
protein Y49E10.28 protein.
Length = 325
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 334 IDCDTTLTLSL*FVQYPSIFEGSFTHFW 251
I CD L+ + F PSIF G ++FW
Sbjct: 4 ITCDKLLSSASCFEPLPSIFIGKSSNFW 31
>Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical
protein W01D2.2a protein.
Length = 412
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 206 WWY*QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITID 334
WW T+ + G GS+ A + D K+E + G+ ID
Sbjct: 246 WWLCSTWSAKAGCNGVCYSNGSYHPASISDMPKSEGKHGVRID 288
>AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 206 WWY*QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITID 334
WW T+ + G GS+ A + D K+E + G+ ID
Sbjct: 252 WWLCSTWSAKAGCNGVCYSNGSYHPASISDMPKSEGKHGVRID 294
>AF273812-1|AAG15161.1| 225|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 225
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 206 WWY*QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITID 334
WW T+ + G GS+ A + D K+E + G+ ID
Sbjct: 59 WWLCSTWSAKAGCNGVCYSNGSYHPASISDMPKSEGKHGVRID 101
>AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 415
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 206 WWY*QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITID 334
WW T+ + G GS+ A + D K+E + G+ ID
Sbjct: 249 WWLCSTWSAKAGCNGVCYSNGSYHPASISDMPKSEGKHGVRID 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,217
Number of Sequences: 27780
Number of extensions: 242373
Number of successful extensions: 849
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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