Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20234
(575 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 182 3e-48
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 178 4e-47
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 160 8e-42
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 127 7e-32
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 33 0.002
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 24 0.94
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 23 2.2
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 23 2.9
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 182 bits (442), Expect = 3e-48
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS
Sbjct: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVLIVAAGTGEFEAGISKNGQ
Sbjct: 108 QADCAVLIVAAGTGEFEAGISKNGQ 132
Score = 101 bits (243), Expect = 4e-24
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 47.2 bits (107), Expect = 1e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQLIVGVNK
Sbjct: 133 TREHALLAFTLGVKQLIVGVNK 154
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 178 bits (433), Expect = 4e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTS
Sbjct: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVLIVAAG GEFEAGISKNGQ
Sbjct: 108 QADCAVLIVAAGIGEFEAGISKNGQ 132
Score = 101 bits (243), Expect = 4e-24
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ+ K
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 47.2 bits (107), Expect = 1e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQLIVGVNK
Sbjct: 133 TREHALLAFTLGVKQLIVGVNK 154
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 160 bits (389), Expect = 8e-42
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 284 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 463
WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60
Query: 464 AGTGEFEAGISKNGQ 508
AGTGEFEAGISKNGQ
Sbjct: 61 AGTGEFEAGISKNGQ 75
Score = 47.2 bits (107), Expect = 1e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQLIVGVNK
Sbjct: 76 TREHALLAFTLGVKQLIVGVNK 97
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 127 bits (307), Expect = 7e-32
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +2
Query: 332 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 508
DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ
Sbjct: 1 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 59
Score = 47.2 bits (107), Expect = 1e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQLIVGVNK
Sbjct: 60 TREHALLAFTLGVKQLIVGVNK 81
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 33.1 bits (72), Expect = 0.002
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 371 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 475
VT +D PGH FI G D VL+VAA G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229
Score = 25.4 bits (53), Expect = 0.41
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 126 KTHINIVVIGHVDSGKST 179
K H + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 24.2 bits (50), Expect = 0.94
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 135 INIVVIGHVDSGKST 179
INI IGHV GKST
Sbjct: 43 INIGTIGHVAHGKST 57
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 356 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 457
T KYY D P + FIKN+ ++ +D LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 356 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 457
T KYY D P + FIKN+ ++ +D L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,963
Number of Sequences: 438
Number of extensions: 2862
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -