Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20234
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 160 5e-40
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 160 5e-40
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 160 5e-40
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 160 5e-40
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 100 6e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 83 1e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 65 4e-11
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 65 4e-11
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 43 1e-04
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 43 1e-04
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 43 1e-04
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 41 7e-04
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 38 0.004
At5g13650.2 68418.m01585 elongation factor family protein contai... 36 0.015
At5g13650.1 68418.m01584 elongation factor family protein contai... 36 0.015
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 36 0.019
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 36 0.019
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 36 0.019
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.14
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.24
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.24
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.32
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.32
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.3
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.3
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.3
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.7
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.7
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 29 2.2
At2g03360.1 68415.m00295 hypothetical protein contains Pfam doma... 27 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 160 bits (389), Expect = 5e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTS
Sbjct: 48 EMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVLI+ + TG FEAGISK+GQ
Sbjct: 108 QADCAVLIIDSTTGGFEAGISKDGQ 132
Score = 91.9 bits (218), Expect = 3e-19
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQ+I NK
Sbjct: 133 TREHALLAFTLGVKQMICCCNK 154
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 160 bits (389), Expect = 5e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTS
Sbjct: 48 EMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVLI+ + TG FEAGISK+GQ
Sbjct: 108 QADCAVLIIDSTTGGFEAGISKDGQ 132
Score = 91.9 bits (218), Expect = 3e-19
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQ+I NK
Sbjct: 133 TREHALLAFTLGVKQMICCCNK 154
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 160 bits (389), Expect = 5e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTS
Sbjct: 48 EMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVLI+ + TG FEAGISK+GQ
Sbjct: 108 QADCAVLIIDSTTGGFEAGISKDGQ 132
Score = 91.9 bits (218), Expect = 3e-19
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQ+I NK
Sbjct: 133 TREHALLAFTLGVKQMICCCNK 154
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 160 bits (389), Expect = 5e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 433
EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTS
Sbjct: 48 EMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTS 107
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQ 508
QADCAVLI+ + TG FEAGISK+GQ
Sbjct: 108 QADCAVLIIDSTTGGFEAGISKDGQ 132
Score = 91.9 bits (218), Expect = 3e-19
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = +3
Query: 114 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQKWVK 266
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHALLAFTLGVKQ+I NK
Sbjct: 133 TREHALLAFTLGVKQMICCCNK 154
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 100 bits (240), Expect = 6e-22
Identities = 41/77 (53%), Positives = 58/77 (75%)
Frame = +2
Query: 260 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 439
GKGSF YAW LD+ ERERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QA
Sbjct: 282 GKGSFAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQA 341
Query: 440 DCAVLIVAAGTGEFEAG 490
D A+L++ A G FEAG
Sbjct: 342 DAAILVIDASVGAFEAG 358
Score = 50.4 bits (115), Expect = 8e-07
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +3
Query: 129 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ 254
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAK 279
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREHA + GV+Q+IV +NK
Sbjct: 366 TREHARVLRGFGVEQVIVAINK 387
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 83.0 bits (196), Expect = 1e-16
Identities = 39/97 (40%), Positives = 60/97 (61%)
Frame = +2
Query: 218 QTYHREVREGGPEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 397
Q Y +E ++ E S+ A+++D + ER +G T+++ FET TI+DAPGH
Sbjct: 134 QKYEKEAKDKSRE----SWYMAYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGH 189
Query: 398 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 508
+ ++ NMI+G SQAD VL+++A GEFE G + GQ
Sbjct: 190 KSYVPNMISGASQADIGVLVISARKGEFETGYERGGQ 226
Score = 57.6 bits (133), Expect = 6e-09
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +3
Query: 123 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ 254
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA+
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAK 141
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 508 TREHALLAFTLGVKQLIVGVNK 573
TREH LA TLGV +LIV VNK
Sbjct: 227 TREHVQLAKTLGVSKLIVVVNK 248
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 64.9 bits (151), Expect = 4e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 470 TG 475
G
Sbjct: 177 DG 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 111 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 245
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 64.9 bits (151), Expect = 4e-11
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+DK E++RGITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+
Sbjct: 105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGP 164
Query: 470 TG 475
G
Sbjct: 165 DG 166
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 120 KEKTHINIVVIGHVDSGKSTTT 185
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 290 LDKLKAERERGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 457
LD + ERERGITI + + +E + + + +ID PGH DF + + + A+L+
Sbjct: 123 LDNMDLERERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV 182
Query: 458 VAAGTG 475
V A G
Sbjct: 183 VDASQG 188
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 236
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D + ERE+GITI A Y V IID PGH DF + D A+L++ +
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSV 167
Query: 470 TGEFEAGISKNGQ 508
G I+ + Q
Sbjct: 168 GGVQSQSITVDRQ 180
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGI 215
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D + ERE+GITI A Y V IID PGH DF + D A+L++ +
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSV 167
Query: 470 TGEFEAGISKNGQ 508
G I+ + Q
Sbjct: 168 GGVQSQSITVDRQ 180
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGGI 215
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D L E+ R IT+ + + Y + +ID+PGH DF + T +D A+++V A
Sbjct: 49 MDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAV 108
Query: 470 TG 475
G
Sbjct: 109 EG 110
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCGG 212
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +2
Query: 290 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 469
+D ++ E+ERGITI A K+ + IID PGH DF + D A+ + +
Sbjct: 136 MDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 195
Query: 470 TG 475
G
Sbjct: 196 AG 197
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 126 KTHINIVVIGHVDSGKSTTTGHLIYKCG 209
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 287 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
++D ERERGITI V IID PGH DF + + D +L+V +
Sbjct: 120 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDS 179
Query: 467 GTG 475
G
Sbjct: 180 VEG 182
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 287 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
++D ERERGITI V IID PGH DF + + D +L+V +
Sbjct: 119 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDS 178
Query: 467 GTG 475
G
Sbjct: 179 VEG 181
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 35.9 bits (79), Expect = 0.019
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Frame = +2
Query: 245 GGPEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---------ETSKYYVTIIDAPGH 397
G + G G +Y LDKL +RERGIT+ E S Y + +ID PGH
Sbjct: 91 GTIKKGHGQPQY---LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGH 145
Query: 398 RDFIKNMITGTSQADCAVLIVAAGTG 475
DF + S A+L+V A G
Sbjct: 146 VDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 111 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 221
K EK N +I H+D GKST L+ G I K
Sbjct: 60 KFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +2
Query: 308 ERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 472
E+ER I+I + L + Y I+D PGH +F M AD AVLIV A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAE 244
Query: 473 G 475
G
Sbjct: 245 G 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +2
Query: 308 ERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 472
E+ER I+I + L + Y I+D PGH +F M AD AVLIV A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAE 244
Query: 473 G 475
G
Sbjct: 245 G 245
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 33.1 bits (72), Expect = 0.14
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 245 GGPEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNM 418
G + GK S A + A GIT + + S +T +D PGH F +
Sbjct: 226 GHVDHGKTSLLDALRNTSVAAREAGGITQHVGAFVVGMPDSGTSITFLDTPGHAAFSEMR 285
Query: 419 ITGTSQADCAVLIVAAGTG 475
G + D VL+VAA G
Sbjct: 286 ARGAAVTDIVVLVVAADDG 304
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 356 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 356 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.32
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 368 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 350 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 466
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 377 IIDAPGHRDFIKNMITGTSQADCAVLIV 460
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 377 IIDAPGHRDFIKNMITGTSQADCAVLIV 460
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 377 IIDAPGHRDFIKNMITGTSQADCAVLIV 460
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 359 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 460
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 138 NIVVIGHVDSGKSTTTGHLIYKCG 209
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 371 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 460
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +2
Query: 296 KLKAERERGITIDIALWKFET----SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 463
K+ A GIT I +K +D PGH F G D A+++VA
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVA 584
Query: 464 AGTG 475
A G
Sbjct: 585 ADDG 588
>At2g03360.1 68415.m00295 hypothetical protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 393
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -2
Query: 103 WSYGYIDF--TFSLHKTIFFDTHHGLQTAC 20
W YID TFS HKTI D + T C
Sbjct: 137 WMPKYIDILGTFSKHKTILLDKENASITHC 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,124
Number of Sequences: 28952
Number of extensions: 226142
Number of successful extensions: 671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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