Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20231
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 369 TYREKLRAYCHAWNPYDC 422
           T+   +R    AWNP DC
Sbjct: 477 TWMPVMRICVSAWNPKDC 494


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 704 CPEYHHCVINDYQQDSSPNSVHLN 633
           C ++++CV   Y   + PN +  N
Sbjct: 122 CDKFYYCVDGKYNMITCPNGLVYN 145


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 354 VNQISSFLLLIFYNNDISTLHYSH 283
           V  +++     +YN D+S  HY +
Sbjct: 353 VTNLTNLTYPSYYNQDVSCTHYQN 376


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = -1

Query: 704  CPEYHHCVINDYQQDSSPNSVHLNQ 630
            C  Y+ CV+ + ++      +H N+
Sbjct: 1115 CNAYYRCVLGELRKQYCAGGLHWNK 1139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,665
Number of Sequences: 336
Number of extensions: 4659
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)