Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20231
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    30   0.41 
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   6.6  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    26   6.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   6.6  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   8.8  

>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 347 RFHHFFC*SSITMISPHFIILITEHSIPSLTTNAQFRISLNLRYKKISSKIWS 189
           R HHF C  ++ +I P F  L T+ ++ +   N + RIS      ++   IW+
Sbjct: 195 RMHHFECIGNLYLIGPKF--LKTKEAVLNQYRNKEKRISKTTDSSQMKKIIWT 245


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 297 VWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNPYDCSR 428
           V+ Y   ++++EEM+   +   L+ + EK +A      PYD  +
Sbjct: 288 VFNYASSKKISEEMISQAIDKNLQEFEEKFQATFPLKAPYDTEK 331


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 345 SDLLSCLRTYREKLRAYCHAWNPYDCSRNIYIKPNGFTLHRNPVAQSTDACRGKV 509
           S LLSC++TYR      C + + YD +  I IK       +  +    DA RG +
Sbjct: 134 SSLLSCMKTYRATALFGC-STDTYDSAGKI-IKIAVHIPTKEEILSGLDAFRGDI 186


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 297 VWR-YHCYRRLTEEMMKSDLLSCL 365
           VW  YHCY +   E ++++L+ CL
Sbjct: 437 VWSFYHCYSKSAIEGLQTNLILCL 460


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 508 WILSWSSCLGNYMGRSPWHSS 570
           WI  WS+ +GN +G+   +SS
Sbjct: 149 WITGWSNYIGNIIGQPSVNSS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,197
Number of Sequences: 5004
Number of extensions: 76675
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)