Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20231
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 30 1.7
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 30 1.7
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 29 4.0
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 29 4.0
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 5.2
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 28 6.9
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 9.2
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 301 HTSLFSSLSILYQVLQPTHSFEYLSILDTKK*VPKYGQV*FQQKH 167
H +F+ L +LY +P E++ + T+ +PK + +Q+H
Sbjct: 1327 HMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQH 1371
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 301 HTSLFSSLSILYQVLQPTHSFEYLSILDTKK*VPKYGQV*FQQKH 167
H +F+ L +LY +P E++ + T+ +PK + +Q+H
Sbjct: 1327 HMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQH 1371
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 240 KLCVGCKTWYRMLSDENNEVWRYHC 314
++ VG + W+ + DE N VW++ C
Sbjct: 100 RILVGMR-WWNEIDDEGNSVWKFEC 123
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 240 KLCVGCKTWYRMLSDENNEVWRYHC 314
++ VG + W+ + DE N VW++ C
Sbjct: 94 RILVGLR-WWNEIDDEGNSVWKFEC 117
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 550 FPYNFPSMTTTIKSTFPLQASVLCATGFLCKVNPFG 443
F Y FP + ++ + PL VL T +L KV+ FG
Sbjct: 427 FSYGFPQAGSCVEISMPLILLVLLCTLYLRKVSLFG 462
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 521 GRHAWEIIWEGPLGTVAVIGVSTRDAPLQCQGYVGLLGSDELSWGWNLVDN 673
G W +W GP GT++ I + + G+ G L D + V N
Sbjct: 317 GHEEWTDLWGGPGGTLSEISLQPGEYLTSVAGHYGRLDGDLVVRSLTFVSN 367
>11_06_0458 +
23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 154 RYKKYAFAEI-IPDHILELIFLYLRLRDIRNCALVVRLGIECSVMRIMKC 300
RY + + I +PD I EL FL + D+ NC + +L ++R +KC
Sbjct: 645 RYLRIRASNISLPDQIGELQFLVIL--DLLNCIGISKLPASIVILRHLKC 692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,951,887
Number of Sequences: 37544
Number of extensions: 435447
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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