Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20231
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        29   5.4  

>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
 Frame = +2

Query: 503 KGGFYRGRHAWEIIWEG-PLGTVAVIGVSTRDAPLQCQGYVGLLGSDELSWGWNLVDNHL 679
           K GF RG H WEI W     GT AV+GV+T  APL C GY  L+G+ E  WGW++V N L
Sbjct: 96  KVGFNRGFHVWEIHWSTRQRGTHAVVGVATAKAPLHCTGYHSLVGNTEDGWGWDIVRNKL 155

Query: 680 LHNGDTQDTI 709
            H+     T+
Sbjct: 156 YHDEKGNSTV 165



 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
 Frame = +3

Query: 402 AWNPYDCSRNIYIKPNG-FTLHRNPVAQSTDACRGKVDF 515
           AWNP D S N+++K +  FT HR+PVAQSTD+ R KV F
Sbjct: 61  AWNPADRSVNVFVKDDDPFTFHRHPVAQSTDSIRAKVGF 99


>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 512 FYRGRHAWEIIWEGPLGTVAVIGVSTRDAPLQCQG--YVGLLGSDELSWG 655
           F  G+H WEI      GT  +IGV+T+DA L      YV L+G D+ SWG
Sbjct: 118 FAHGQHYWEIKLTDVRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQESWG 167


>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 297 VWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNPYDCSRNIYI 440
           VWR   Y+ L EE+      +    Y+ +L+AY H  NP++   ++++
Sbjct: 588 VWRICDYKDLYEEIYSPSFYTSKYGYKVQLKAYLHT-NPFNGETHLWL 634


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 231 RYSKLCVGCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSD 350
           RY + CV    +Y          +RY CYRR+TE  +  D
Sbjct: 136 RYRRRCVWRYKYYHGKPRRYRHCYRY-CYRRITERSLAGD 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,830,715
Number of Sequences: 59808
Number of extensions: 538536
Number of successful extensions: 1285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)