Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20231
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    34   0.088
At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot...    31   1.1  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    30   1.4  
At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi...    29   2.5  
At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containi...    29   3.3  
At2g40400.2 68415.m04982 expressed protein similar to GI:7572912...    29   4.4  
At2g40400.1 68415.m04981 expressed protein similar to GI:7572912...    29   4.4  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    28   5.8  

>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 425 EKHLYQTKWIYFTQKSCST-EYRCL*RKGGFYRGRHAWEIIWEGPLGTVAVIGVSTRDAP 601
           EK L  T+W Y  ++SC+T  ++CL    G+ +  H ++  + G    V   G S+R   
Sbjct: 513 EKGLDPTEWFYINKESCTTIHHKCLFGDSGYMKPGHIFD--YCGNKVEVVGNGSSSRPIC 570

Query: 602 LQCQ 613
           L CQ
Sbjct: 571 LTCQ 574


>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
           contains Pfam profile PF00439: Bromodomain
          Length = 475

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +3

Query: 219 SKIERYSKLCVGCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYC 398
           +K +   K  VGCK W+  L  +   V         +E+ + S L S L++ + +    C
Sbjct: 57  AKYKDLRKRYVGCKAWFEEL--KKKRVAELKAALLKSEDSIGS-LESKLQSLKSESNDEC 113

Query: 399 HAWNPYDCSRNIYIKPN 449
           H  N YD SR + ++P+
Sbjct: 114 HQ-NNYDSSRTLSLEPS 129


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 166 YAFAEIIPDHILELIFLYLRLRDIRNCALVVR 261
           Y +   +PD  L LIF  L   D++ C+LV R
Sbjct: 71  YDYISNLPDECLSLIFQSLTCADLKRCSLVCR 102


>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 371

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 309 HCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNPYDCSRNIYIKPNGFTLHRNPVAQST 488
           H   R ++   KSD  S    Y  + R     ++P DCSR  Y +P  +   R+ V    
Sbjct: 273 HFNSRRSDHREKSDYPSA---YSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGF 329

Query: 489 D 491
           D
Sbjct: 330 D 330


>At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 816

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 267 YRMLSDENNEVWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNP 413
           Y +L D   +  R +   +L +EM+   LL  L TY   +  YC A NP
Sbjct: 217 YNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNP 265


>At2g40400.2 68415.m04982 expressed protein similar to GI:7572912
           (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 560 QGDLPI*FPKHDDHDKIHLSSTSICTLCYRISV*SKSIWFDINVSRTIIRIPSM-AICSK 384
           +G LPI F  +++  K +L + ++ TLC        S    +     ++  P + A  S 
Sbjct: 24  RGQLPIIFSANNNQKKKNLPNPNVVTLCLHSHSNVSSSQIAVTRRAILVAPPLLAAAASL 83

Query: 383 FFSISSEA 360
           F SISS A
Sbjct: 84  FLSISSAA 91


>At2g40400.1 68415.m04981 expressed protein similar to GI:7572912
           (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 560 QGDLPI*FPKHDDHDKIHLSSTSICTLCYRISV*SKSIWFDINVSRTIIRIPSM-AICSK 384
           +G LPI F  +++  K +L + ++ TLC        S    +     ++  P + A  S 
Sbjct: 24  RGQLPIIFSANNNQKKKNLPNPNVVTLCLHSHSNVSSSQIAVTRRAILVAPPLLAAAASL 83

Query: 383 FFSISSEA 360
           F SISS A
Sbjct: 84  FLSISSAA 91


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 425 EKHLYQTKWIYFTQKSCSTEYR-CL 496
           EK L  TKW Y   K C+T +R CL
Sbjct: 547 EKKLDTTKWFYTCNKCCTTVHRECL 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,124
Number of Sequences: 28952
Number of extensions: 381550
Number of successful extensions: 884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)