Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20230
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 139 3e-34
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 109 3e-25
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 96 4e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 81 9e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 78 8e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 70 2e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 67 2e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 65 6e-12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 1e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 3e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 8e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 60 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 59 5e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 57 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 54 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 8e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 2e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 50 3e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 3e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 50 3e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 49 4e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 47 2e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 1e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 32 0.054
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 1.5
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 2.0
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 4.7
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.2
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.2
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 6.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 6.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 139 bits (336), Expect = 3e-34
Identities = 64/81 (79%), Positives = 73/81 (90%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI++QIRPDR
Sbjct: 242 LIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 301
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QT+M+SATWPKEV++LA DYL
Sbjct: 302 QTVMFSATWPKEVQRLARDYL 322
Score = 83.4 bits (197), Expect = 2e-17
Identities = 38/88 (43%), Positives = 61/88 (69%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L DYIQ+ +GSL L+A+HNI QIV++ +K +L ++E+ + ++ K +IF TK
Sbjct: 322 LNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDN--KVLIFTGTK 379
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
R A++I+R +R+ GWPA+ +HGDK Q +
Sbjct: 380 RVADDITRFLRQDGWPALAIHGDKAQDE 407
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 459 QEIWLASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
Q+ W A ++ + ERD VL +F+ G++ I+VATDVA RG+
Sbjct: 391 QDGWPALAIHGDK-AQDERDWVLNEFRTGKSPIMVATDVASRGI 433
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 109 bits (262), Expect = 3e-25
Identities = 51/85 (60%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 181
L+RG EIV+ TPGR+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II IR
Sbjct: 538 LKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR 597
Query: 182 PDRQTLMWSATWPKEVKKLAEDYLE 256
PDRQT+++SAT+P+ ++ LA L+
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLK 622
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/82 (26%), Positives = 47/82 (57%)
Frame = +1
Query: 262 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 441
++I +G + A+ + QIV++ E K ++L LL E+ +Q +T++FV+ + A+
Sbjct: 625 VEITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELYNNQLD-VRTLVFVDRQESAD 682
Query: 442 NISRNIRRYGWPAVCMHGDKTQ 507
+ ++ + G+ + +HG K Q
Sbjct: 683 ALLSDLMKRGYTSNSIHGGKDQ 704
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+RD + +K G +L+AT V RGL
Sbjct: 706 DRDSTISDYKAGVFDVLIATSVVARGL 732
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 95.9 bits (228), Expect = 4e-21
Identities = 44/86 (51%), Positives = 66/86 (76%), Gaps = 4/86 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR--- 181
+++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMGFEPQIR I+E
Sbjct: 302 IDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTS 361
Query: 182 -PDRQTLMWSATWPKEVKKLAEDYLE 256
+RQTLM+SAT+P++++ LA D+L+
Sbjct: 362 VEERQTLMFSATFPRDIQLLARDFLK 387
Score = 51.6 bits (118), Expect = 8e-08
Identities = 30/88 (34%), Positives = 51/88 (57%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L DY+ +++G + S + NI Q V ++ EK + L +L + P T+IFVETK
Sbjct: 386 LKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL----PPEGLTLIFVETK 440
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
R A+ ++ + +PA +HGD+TQ++
Sbjct: 441 RMADTLTDYLLNSNFPATSIHGDRTQRE 468
Score = 33.9 bits (74), Expect = 0.018
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ L F+ GR SI+VAT VA RGL
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGL 494
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 81.4 bits (192), Expect = 9e-17
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 6/86 (6%)
Frame = +2
Query: 17 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD--- 187
+ ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE IR II PD
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTR 342
Query: 188 ---RQTLMWSATWPKEVKKLAEDYLE 256
RQT+ +SATWP+ V+ LA +L+
Sbjct: 343 NGSRQTVFFSATWPESVRALAATFLK 368
Score = 48.4 bits (110), Expect = 8e-07
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQE-HEKENKLNVLLQEIGQSQEPGAKTIIFVET 426
L D ++I IGS +L+A+ NI QIV+I + KE L+ LL++ S K +IFV
Sbjct: 367 LKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLY 426
Query: 427 KRKAENISRNIRRYGWPAVCMHGDKTQ 507
K++A + + R + V +HGD +Q
Sbjct: 427 KKEAARVEGTLAR-KYNVVGIHGDMSQ 452
Score = 32.7 bits (71), Expect = 0.041
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
R + L FK G+ +LVATDVA RGL
Sbjct: 455 RLQALNDFKSGKCPVLVATDVAARGL 480
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.2 bits (184), Expect = 8e-16
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 19/100 (19%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD- 187
+ +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 372 MSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSN 431
Query: 188 ------------------RQTLMWSATWPKEVKKLAEDYL 253
RQT+M+SAT P V LA+ YL
Sbjct: 432 ASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYL 471
Score = 42.7 bits (96), Expect = 4e-05
Identities = 24/84 (28%), Positives = 46/84 (54%)
Frame = +1
Query: 262 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 441
+ + IG++ + + + Q V++ + K+ + ++EI +S IIFV KR E
Sbjct: 475 VMLTIGNIGQAVDR-VEQRVEMISDDSKKWRR---VEEILESNRFSPPIIIFVNLKRNIE 530
Query: 442 NISRNIRRYGWPAVCMHGDKTQQK 513
I++ + GW AV +HG K+Q++
Sbjct: 531 AIAKQLNAIGWHAVTLHGSKSQEQ 554
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 468 WLASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
W A L+ + + +R+ + Q + A ILVATD+A RG+
Sbjct: 541 WHAVTLHGSK-SQEQRERAIEQLRNKTADILVATDIAGRGI 580
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 70.1 bits (164), Expect = 2e-13
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 181
+L + +++ TPGRL+D LE KG + L+ YL++DEADR+LDM F P I KI++ I
Sbjct: 160 ALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDKILKIIP 218
Query: 182 PDRQTLMWSATWPKEVKKL 238
+R+TL++SAT +V+KL
Sbjct: 219 HERRTLLFSATMTSKVEKL 237
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ + R L +FK G S LVATDVA RGL
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGL 349
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 397 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEM 519
G IIF T + ++ +R G+ A+ +HG +Q +
Sbjct: 285 GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRL 325
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 202
V IV+ TPGR++D KG + CT V+DEAD++L F P I +++ +RQ +
Sbjct: 163 VHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISL 222
Query: 203 WSATWPKEVKKLAEDYLEITFR-SI*DHYNFPQITTFF 313
+SAT+P VK + +L + ++ D +T ++
Sbjct: 223 YSATFPLIVKNFMDKHLNKPYEINLMDELTLRGVTQYY 260
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 65.3 bits (152), Expect = 6e-12
Identities = 36/80 (45%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-R 181
L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GFE ++R+I++ +
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 182 PDRQTLMWSATWPKEVKKLA 241
+RQTL++SAT +V+ LA
Sbjct: 267 ENRQTLLFSATQTTKVEDLA 286
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.1 bits (149), Expect = 1e-11
Identities = 30/87 (34%), Positives = 49/87 (56%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 187
+L+ GV +V+ TPGR+ D +++ VLDEAD ML GF+ QI I + + P
Sbjct: 133 ALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPT 192
Query: 188 RQTLMWSATWPKEVKKLAEDYLEITFR 268
Q ++ SAT P++V ++ ++ R
Sbjct: 193 AQVVLLSATMPQDVLEVTTKFMRDPIR 219
Score = 30.7 bits (66), Expect = 0.17
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ +RD ++++F+ G + IL+ TD+ RG+
Sbjct: 293 DQAQRDTLMHEFRTGSSRILITTDLLARGI 322
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ 507
+ +IF T+RK + ++ + + MHGD Q
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQ 294
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 205
+IV+ATPGR + + L Y+V DEADR+ +MGF Q+ +I+ + RQTL++
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLF 250
Query: 206 SATWPKEVKKLAEDYLE 256
SAT P+ + A+ L+
Sbjct: 251 SATLPRTLVDFAKAGLQ 267
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 534 FKEGRASILVATDVAPRGL 590
F+ G+ ++LV TDVA RG+
Sbjct: 392 FRLGKTNLLVVTDVASRGI 410
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 8e-11
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 199
+ I++ TPGRL+ +++ + L+LDEADR+LDMGF + I+ + RQT+
Sbjct: 161 MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTM 220
Query: 200 MWSATWPKEVKKLA 241
++SAT K VK LA
Sbjct: 221 LFSATQTKSVKDLA 234
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 507 TERDEVLYQFKEGRASILVATDVAPRGL 590
T R EV +F R +L TD+ RGL
Sbjct: 322 TTRTEVTAKFTSSRHVVLFCTDIVARGL 349
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.1 bits (139), Expect = 2e-10
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 187
L + +IVIATPGR ID + ++ +V+DEADRML+ GF ++ +II+
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKS 436
Query: 188 RQTLMWSATWPKEVKKL 238
RQT+++SAT +V L
Sbjct: 437 RQTMLFSATMTDKVDDL 453
Score = 29.9 bits (64), Expect = 0.29
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R L F++G+ + L+ATDVA RG+
Sbjct: 542 QRVRALEDFRDGKCNYLLATDVASRGI 568
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ G +V TPGR+ D + + + L+LDEAD +L+ GF+ QI I + P
Sbjct: 136 LDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT 195
Query: 191 QTLMWSATWPKEVKKLAEDY 250
Q ++ SAT P++V ++ +
Sbjct: 196 QVVVVSATLPQDVLEMTNKF 215
Score = 31.5 bits (68), Expect = 0.095
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD ++ F++G + +L+ TD+ RG+
Sbjct: 298 ERDAIMQDFRQGNSRVLICTDIWARGI 324
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
+ +IF ++RK + ++ +R + MHG+ Q++
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKE 298
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.2 bits (132), Expect = 2e-09
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 14/96 (14%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR-- 181
+ +GV I+I TPGRL D LE ++ + ++VLDE DR++DMGFE + KI+ +
Sbjct: 266 IRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQ 325
Query: 182 ----------PDRQ-TLMWSATWPKEVKKLAEDYLE 256
P R+ T++ SAT VK+L++ L+
Sbjct: 326 SSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALK 361
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +2
Query: 14 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 193
E+ +VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 194 TLMWSAT 214
T ++SAT
Sbjct: 188 TGLFSAT 194
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.6 bits (118), Expect = 8e-08
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +2
Query: 8 SLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIEQIR 181
++ RG ++IATPGRL D L+ T +LDEADR++DMGF I I E +
Sbjct: 158 AIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVT 217
Query: 182 PDR-QTLMWSATWPKEVKKLAEDYLEITFRSI 274
+ + L +SAT P +V + L F+ I
Sbjct: 218 TTKTRKLCFSATMPPKVSNVFRGILGTDFKLI 249
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 504 STERDEVLYQFKEGRASILVATDVAPRGL 590
+ +R + F++ ++ IL ATDV RG+
Sbjct: 329 TAQRRSITESFRKCQSGILFATDVVARGM 357
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.4 bits (115), Expect = 2e-07
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 205
+IVIATP R + + G L + +LV+DEAD ML G+ ++ + + Q+ +
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLM 201
Query: 206 SATWPKEVKKL 238
SAT K + L
Sbjct: 202 SATLSKNIASL 212
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 50.0 bits (114), Expect = 3e-07
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
L + +V+ATPGRL D + E+ L+R +LV+DEADR+L F + +
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 179 --RPDRQTLMWSATWPKEVKKL 238
DRQTL+++AT +++L
Sbjct: 182 PASEDRQTLLFTATVTDAIRQL 203
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER L +F+ A ILVATDVA RGL
Sbjct: 296 ERINSLGRFRAEAAKILVATDVASRGL 322
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 2 GTSLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
G E ++++++TPGRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 254 GDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLM 202
+IVI TPG ++D +++ + + VLDEAD MLD G Q +I + + Q ++
Sbjct: 232 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 291
Query: 203 WSATWPKEVKKLAEDY 250
+SAT+ + V+K AE +
Sbjct: 292 FSATFSERVEKYAERF 307
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+RD ++ F+ G + +LV T+V RG+
Sbjct: 390 QRDAIMDSFRVGTSKVLVTTNVIARGI 416
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 49.2 bits (112), Expect = 4e-07
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 205
IV+ATPGRL + + + + VLDE D++L+ + I+++ P +Q +M+
Sbjct: 176 IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMF 235
Query: 206 SATWPKEVKKLAEDYLE 256
SAT E++ + + +++
Sbjct: 236 SATLSNEIRPICKKFMQ 252
Score = 41.5 bits (93), Expect = 9e-05
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +1
Query: 178 TPRQTDFDVVSY-LAQRSKETC*GLLGDYIQINIGSLQLSANHNILQIVDICQEHEKENK 354
TP Q + S L+ + C + + ++I + H + Q +E K K
Sbjct: 226 TPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRK 285
Query: 355 LNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEMK 522
+N LL + +Q +IFV++ +A + R +R +P++C+HG Q++ +K
Sbjct: 286 INDLLDSLEFNQ-----VVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIK 336
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 47.2 bits (107), Expect = 2e-06
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE---- 172
L + +V+ATPGRL + + T N ++ LVLDEADR+L ++ K++E
Sbjct: 239 LNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGN 298
Query: 173 QIRPDRQTLMWSATWPKEVKKLAEDYLEITFRSI*DHYNFP 295
+ RQT ++SAT+ + +++ + ++ +I + YN P
Sbjct: 299 PMHTQRQTFIFSATFDEGLQQRLKKNMK---GNITEKYNSP 336
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R + L +FK +LV TDVA RG+
Sbjct: 427 KRLQSLEKFKNNPKGVLVCTDVAARGI 453
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L ++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 163 LREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSN 221
Query: 191 -QTLMWSATWPKEVKKLAE 244
++SAT P V++LA+
Sbjct: 222 ICKSLFSATIPSRVEELAK 240
Score = 29.9 bits (64), Expect = 0.29
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R+E L +F++G +L+ATD+ RG+
Sbjct: 326 KREEALAKFRKGEIWVLIATDLLARGI 352
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.054
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 GTSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIEQI 178
G L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 134 GRCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAEL 193
Query: 179 RPDRQT 196
QT
Sbjct: 194 SESLQT 199
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 519 EVLYQFKEGRASILVATDVAPRGL 590
+ L++FK G+ ++L+AT VA G+
Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGI 437
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 474 ASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
A+ Y+ N ++ E + QF+ G + LVAT + GL
Sbjct: 507 ANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGL 545
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 167 IEQIRPDRQTLMWSATWPKEVKKLAED 247
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 279 SYIDLNVISK*SSASFFTSLGQVADHIKVCLSGRICSMIFLIC 151
S +DL + S S + F S+ + H +CL FL C
Sbjct: 25 SLVDLLIPSLCCSLAVFPSIPLINTHSNLCLFSNFSHSCFLFC 67
>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 94
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 529 YRTSSLSVEFYRHAYKQLASHIS*CSLICSQLFSWFQQKLLFSHQVL 389
+RT + R A+ L +I+ CS LFSW +K + S V+
Sbjct: 12 FRTEEEERSYSRKAFFHLIGYIT-----CSVLFSWLVRKKVISSPVV 53
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 439 QLFSWFQQKLLFSHQVLDFVQFLA 368
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
++E + QF++G + L+AT + GL
Sbjct: 481 QNETVKQFQKGEVNTLIATSIGEEGL 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,972
Number of Sequences: 5004
Number of extensions: 50754
Number of successful extensions: 231
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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