Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20230
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 147 5e-36
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 6e-23
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 4e-17
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 75 4e-14
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 75 4e-14
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 74 8e-14
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 73 2e-13
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 73 2e-13
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 71 5e-13
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 64 6e-11
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 64 6e-11
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 64 6e-11
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 57 9e-09
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 52 5e-07
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 51 8e-07
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 50 1e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 46 3e-05
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 45 4e-05
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 43 2e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 40 0.002
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 39 0.003
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 34 0.076
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 33 0.17
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 32 0.30
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 29 2.8
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 29 2.8
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 28 5.0
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 27 8.7
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 147 bits (357), Expect = 5e-36
Identities = 69/81 (85%), Positives = 73/81 (90%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LERGVEI IATPGRLID LE TNL+RCTYLVLDEADRMLDMGFEPQIR II+QIRPDR
Sbjct: 179 LERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDR 238
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTLMWSATWPKEV+ LA D+L
Sbjct: 239 QTLMWSATWPKEVQGLAHDFL 259
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L DY+ I +GSL L+ANH ILQIVD+C++HEKE+ + + G +T+IF ETK
Sbjct: 259 LSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHNVGSFIG--GIVILSSLQTLIFTETK 316
Query: 430 RKAENISRNIRRYG 471
R+A+ ++R +R G
Sbjct: 317 RRADELTRKLRSDG 330
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 104 bits (249), Expect = 6e-23
Identities = 54/93 (58%), Positives = 67/93 (72%), Gaps = 11/93 (11%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRK------ 163
L+RG EI++ TPGR+ID L TN QRCTYLVLDEADRM DMGFEPQI K
Sbjct: 191 LKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKV 250
Query: 164 --IIEQIRPDRQTLMWSATWPKEVKKLAEDYLE 256
II+ IRPDRQT+M+SAT+P++++ LA L+
Sbjct: 251 MRIIDCIRPDRQTVMFSATFPRQMEALARKILD 283
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 102 bits (245), Expect = 2e-22
Identities = 49/86 (56%), Positives = 66/86 (76%), Gaps = 4/86 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ-IRPD 187
L+R +++ATPGRL+D +++G L +LVLDEADRMLDMGFEPQIR+I++Q P
Sbjct: 972 LDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPK 1031
Query: 188 ---RQTLMWSATWPKEVKKLAEDYLE 256
RQTLM+SAT+PKE++ LA D+LE
Sbjct: 1032 TGIRQTLMFSATFPKEIQMLARDFLE 1057
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L +YI + +G + S + NI Q V E +K + L LL G Q T++FVETK
Sbjct: 1056 LENYIFLAVGKVG-STSENITQKVVWVDEFDKRSFLLDLLNASGPQQ----LTLVFVETK 1110
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
+ A+ + + + G+ +HGD++Q++
Sbjct: 1111 KGADALEMFLAKDGYYCTSIHGDRSQRE 1138
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+E L F+ G ILVAT VA RGL
Sbjct: 1138 EREEALRTFRCGDTPILVATAVAARGL 1164
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 101 bits (243), Expect = 3e-22
Identities = 46/85 (54%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI---- 178
L+ G +++ TPGRL DF+EKG +L+ +L+LDEADRMLDMGFEP IR+I+E +
Sbjct: 835 LQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPD 894
Query: 179 RPDRQTLMWSATWPKEVKKLAEDYL 253
+ +RQTLM+SAT+P+E+++LA D+L
Sbjct: 895 KSERQTLMFSATFPEEIQRLAGDFL 919
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/98 (28%), Positives = 52/98 (53%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L DY+ + +G + +I Q V ++EK ++L +L + G +T++FVE+K
Sbjct: 919 LNDYLFLTVGRVG-GTTSDIEQTVIEVTDNEKRDRLTQILGDAGTD-----RTLVFVESK 972
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQKEMKFCISSRK 543
R A+ ++ + G+P +HGD+ QQ+ + RK
Sbjct: 973 RSADFLAIFLSGEGFPTTSIHGDRLQQEREEALDDFRK 1010
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+E L F++GR +L+AT+VA RGL
Sbjct: 1000 EREEALDDFRKGRCPVLIATNVAARGL 1026
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 85.0 bits (201), Expect = 4e-17
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ--- 175
+ LERG ++ TPGRL DF+ + L +L+LDEADRMLD+GF P I K+IE+
Sbjct: 597 SQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNM 656
Query: 176 -IRPDRQTLMWSATWPKEVKKLAEDYLE 256
+ RQTLM+SAT+P E++ LA +L+
Sbjct: 657 TAKESRQTLMFSATFPDEIQHLAGSFLK 684
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 74.9 bits (176), Expect = 4e-14
Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 202
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ + +II+ + +RQ L+
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILL 232
Query: 203 WSATWPKEVKKLAEDYLEITFR-SI*DHYNFPQITTFF 313
+SAT+P V+ E +L + ++ D +T ++
Sbjct: 233 FSATFPISVRDFKEKHLRKPYEINLMDELTLHGVTQYY 270
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 74.9 bits (176), Expect = 4e-14
Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 202
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ + +II+ + +RQ L+
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILL 232
Query: 203 WSATWPKEVKKLAEDYLEITFR-SI*DHYNFPQITTFF 313
+SAT+P V+ E +L + ++ D +T ++
Sbjct: 233 FSATFPISVRDFKEKHLRKPYEINLMDELTLHGVTQYY 270
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 74.1 bits (174), Expect = 8e-14
Identities = 31/83 (37%), Positives = 56/83 (67%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 184
+S E GV++++ATPGR+++ + + +L V+DE D ML +GFE Q+++I+E++
Sbjct: 250 SSPEMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSN 309
Query: 185 DRQTLMWSATWPKEVKKLAEDYL 253
RQT+++SAT P ++ +A L
Sbjct: 310 RRQTMLFSATIPPSIEAMASRLL 332
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/88 (37%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII----EQ 175
++ G+++++ TPGR++DF+ +GT +L + ++VLDE DRMLDMGF + +++ +
Sbjct: 191 AINSGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAE 250
Query: 176 IRPDR-QTLMWSATWPKEVKKLAEDYLE 256
R D+ QTL++SAT P A+ Y++
Sbjct: 251 DREDKPQTLLFSATLPPWAVNTAKKYMK 278
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R+ L F+EG+ LVATDVA RGL
Sbjct: 342 QREVTLKSFREGKFRCLVATDVAARGL 368
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 187
L++GV ++IATPGRL+D L+ L + LV+DEADR+L++GFE ++R+II +
Sbjct: 691 LQKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSK 750
Query: 188 RQTLMWSATWPKEVKKLAE 244
RQT+++SAT K V+ LA+
Sbjct: 751 RQTVLFSATQTKNVEDLAK 769
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII---EQI 178
+L G ++V+ATPGRL+D L + TYLV+DE DRML MG E Q+RKI+
Sbjct: 213 ALREGADVVVATPGRLLD--------LYKITYLVMDEPDRMLGMGMEEQLRKIVGLATGT 264
Query: 179 RPDRQTLMWSATWPKEVKKLA 241
RQTL+WSAT P+ +++LA
Sbjct: 265 SRARQTLLWSATLPESLERLA 285
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
R +++ F++G+ ILVATDVA RGL
Sbjct: 371 RFKLVKAFRDGKVDILVATDVASRGL 396
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 71.3 bits (167), Expect = 5e-13
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCT---YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 199
IV+ TPGRL+ +++ T N CT LVLDEADR+LDMGF P + IIE + +RQTL
Sbjct: 174 IVVCTPGRLLQHMDE-TPNFD-CTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTL 231
Query: 200 MWSATWPKEVKKLA 241
++SAT + VK LA
Sbjct: 232 LYSATQTRSVKDLA 245
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/82 (48%), Positives = 50/82 (60%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 187
+L+ G EIV+ATPGRLID ++ TNL R TYLV DEADRM DMGF
Sbjct: 636 ALQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGF-------------- 681
Query: 188 RQTLMWSATWPKEVKKLAEDYL 253
L++SAT+ K+V+ L D L
Sbjct: 682 --ALLFSATFKKKVEHLCRDIL 701
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVA 578
ER +VL QFK+ ILVATDVA
Sbjct: 767 ERSKVLGQFKKREIPILVATDVA 789
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 409 IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEMK 522
+IFV K +E ++ N+R+ + +HGD Q + K
Sbjct: 733 LIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSK 770
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/86 (36%), Positives = 48/86 (55%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LE GV +V+ TPGR+ D + +G N + VLDEAD ML GF+ QI + ++
Sbjct: 206 LEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSV 265
Query: 191 QTLMWSATWPKEVKKLAEDYLEITFR 268
Q ++ SAT P +V ++ ++ R
Sbjct: 266 QVVLLSATMPTDVLEVTNKFMRDVVR 291
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD ++ +F+ G + +L+ TD+ RG+
Sbjct: 368 ERDIIMKEFRSGSSRVLITTDLLARGI 394
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/57 (50%), Positives = 39/57 (68%)
Frame = +2
Query: 83 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 253
N+ YLVLDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSAL 69
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEM 519
+ +IF E K ++I + G AV +HGDK+Q++ +
Sbjct: 89 QVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERV 127
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER + +F +G +LVATDVA +GL
Sbjct: 125 ERVHAIREFHQGNKDVLVATDVASKGL 151
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 184
SL +VIATPGRL D ++ T NL++ +LVLDEADR+LD F ++ I + +
Sbjct: 121 SLANKPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPE 180
Query: 185 DRQTLMWSAT 214
RQTL++SAT
Sbjct: 181 KRQTLLFSAT 190
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER L +FK G ILVATDVA RGL
Sbjct: 285 ERLAALARFKSGTIKILVATDVASRGL 311
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/57 (50%), Positives = 39/57 (68%)
Frame = +2
Query: 83 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 253
N+ YLVLDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSAL 69
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEM 519
+ +IF E K ++I + G AV +HGDK+Q++ +
Sbjct: 89 QVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERV 127
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER + +F +G +LVATDVA +GL
Sbjct: 125 ERVHAIREFHQGNKDVLVATDVASKGL 151
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ G IV TPGR+ D + + + LVLDEAD ML+ GF+ QI + + P
Sbjct: 112 LDYGQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 171
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q ++ SAT P E+ ++ ++
Sbjct: 172 QVVLLSATLPHEILEMTSKFM 192
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
+ +IF TKRK + ++ +R + MHGD Q++
Sbjct: 238 QAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKE 274
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ ++ F+ G++ +L++TDV RGL
Sbjct: 274 EREAIMKDFRAGQSRVLISTDVWARGL 300
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +2
Query: 137 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 253
MGFEP+I+KI+ IRPDRQT+M SATWP V+++A+ Y+
Sbjct: 1 MGFEPEIKKILLDIRPDRQTVMTSATWPPGVQRMADQYM 39
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R++ L FK G A IL+ATDVA RGL
Sbjct: 80 DREQALDDFKTGLARILIATDVASRGL 106
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 57.2 bits (132), Expect = 9e-09
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +2
Query: 104 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 253
LVLDEADRMLDMGF IR+++ ++ RQ L++SAT+ ++K LAE L
Sbjct: 7 LVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLL 56
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 17 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+ I + TPGR+ +E+ + +LDEAD++LD F+ QI I + ++Q
Sbjct: 130 KSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQM 189
Query: 197 LMWSATWPKEVKKLAEDYL-EITF 265
+ +SAT+P+ + + Y+ E TF
Sbjct: 190 MAFSATYPEVLANHLKKYMTEPTF 213
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDM-GFEPQIRKIIEQIRPDRQTLM 202
I+I TPG L+D++ K ++ + VLDEAD M+ + G + Q +I + + D Q L+
Sbjct: 224 IIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVLL 283
Query: 203 WSATWPKEVKKLAE 244
+SAT+ ++V K AE
Sbjct: 284 FSATYDEDVMKFAE 297
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQ 154
L + I+IATPGRLID LE KG + L+ YLV+DEADR+L+M FE +
Sbjct: 79 LAKKPHIIIATPGRLIDHLENTKGFS-LRTLKYLVMDEADRILNMDFEKE 127
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 24/76 (31%)
Frame = +2
Query: 98 TYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD-------------------RQTLMW 205
T V+ ADRM+DMGFEP+++KI+E ++PD RQT+M+
Sbjct: 209 TVSVIGGADRMIDMGFEPEVQKILEHLPVSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMF 268
Query: 206 SATWPKEVKKLAEDYL 253
+AT P +V++LA++YL
Sbjct: 269 TATMPPQVERLAKNYL 284
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 456 HQEIWLASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+Q+ + A+ L+ R N +R+ L K G ILVATDVA RG+
Sbjct: 305 NQKKFRATTLHGGR-NQEQREFALSSLKGGSKDILVATDVAGRGI 348
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
LE V++++ATPG L+ + +K T+LV+DEAD M D F+ +I+ I
Sbjct: 502 LESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHTI 557
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/55 (25%), Positives = 33/55 (60%)
Frame = +1
Query: 334 EHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 498
+HEK ++ LL++ S+ PG +TI+F + + ++R++ ++ + +HG+
Sbjct: 636 QHEKAERIVELLKK--DSKSPG-QTIVFCNSASSCDWLARHLEQHNLSLIRLHGN 687
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
V+IV TPG+L DF+ +L + + +LDEAD +L G I KI +I
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
V +V+ + EK +N+Q YLV+DEADRM++ G ++ I+E I
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +2
Query: 2 GTSLERGVEIVIATPGRLIDFL--EKGTTNLQRCTYLVLDEADRMLDM---GFEPQIRKI 166
G + +I++ TP RL+ L E L +L+LDEAD++ + GF QI I
Sbjct: 250 GAKSSKRFDILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATI 309
Query: 167 IEQI-RPDRQTLMWSATWPKEVKKLAEDYLE 256
+ +PD ++SAT +++ A +L+
Sbjct: 310 YQACNKPDIHRGLFSATLSNGIEEWAGLHLD 340
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+RD ++ F+ G+ +L+AT++ RG+
Sbjct: 421 QRDNIVKSFRTGKIWVLIATELMGRGI 447
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 136
IV+ TPGR++ + T NL+ + +LDE D+ML+
Sbjct: 170 IVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +1
Query: 301 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 480
H + Q +++EK KL LL + +Q IIFV++ ++ +S + + +PA
Sbjct: 308 HGLQQYYVKLKDNEKNRKLFDLLDLLEFNQ-----VIIFVKSVQRCTALSHLLLKQNFPA 362
Query: 481 VCMHGDKTQQKEM 519
+C+H Q++ +
Sbjct: 363 ICIHRGMKQEERL 375
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 136
IV+ TPGR++ + T NL+ + +LDE D+ML+
Sbjct: 170 IVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 68 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
E+ +N+Q YLV+DEADRM++ G ++ I+E I
Sbjct: 2 EEHVSNVQLLRYLVIDEADRMVEQGHYEELSSILELI 38
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R E L +FK G ILVATD+A RGL
Sbjct: 46 QRLEALQKFKNGEVDILVATDLAARGL 72
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 160
L G E+++ATP + L++ T+L R ++V D+AD ML F +I+
Sbjct: 311 LINGCEVLVATPPCFLRMLKRCYTSLDRLCHVVFDDAD-MLAEYFTAEIK 359
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 127
+S+ G + V+ATPGR + + + L Y+V DEADR
Sbjct: 382 SSVILGGDSVVATPGRFLHVVMEMELKLSSVEYVVFDEADR 422
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFL 67
L+RG EI++ TPGR+ID L
Sbjct: 4 LKRGAEIIVCTPGRMIDML 22
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 104 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 193
LVLDEAD ML+ GF+ QI + + P Q
Sbjct: 39 LVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 31.9 bits (69), Expect = 0.40
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKG 76
LE GV +V+ TPGR+ D + +G
Sbjct: 21 LEEGVHVVVGTPGRVFDMINRG 42
>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 283 LQLSANHN-ILQIVDICQEHEKENKLNVLLQEI-GQSQEPGAKTIIFVETKRKAENISRN 456
L L AN + L IC + ++ N L + + + G SQ G + KRK
Sbjct: 423 LSLDANFSPYLADACICFQAKRSNTLYLSVSQADGSSQLRGKNDVAVRPAKRKVIVGDNT 482
Query: 457 IRRYGWPAVCMHGDKTQQKEMKFC 528
+ YG P V K Q++ FC
Sbjct: 483 VYNYGAPHVTSTSTKAQRRNEHFC 506
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
E++ ++ +FK+G +IL+AT VA GL
Sbjct: 986 EQELIIEEFKKGVVNILIATSVAEEGL 1012
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 133
IVI TP RL + +++ QR +V+DE D+ L
Sbjct: 280 IVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 86 LQRCTYLVLDEADRMLDMGFEPQIRKII 169
LQRC LVLDEA +D + Q++++I
Sbjct: 1219 LQRCKVLVLDEATANVDYRTDRQVQQLI 1246
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 86 LQRCTYLVLDEADRMLDMGFEPQIRKII 169
LQRC LVLDEA +D + Q++++I
Sbjct: 984 LQRCKVLVLDEATANVDYRTDRQVQQLI 1011
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 50 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 181
R + LEKG + LDEAD+M+D F R+++E I+
Sbjct: 372 RQLRHLEKGKETCDQ----KLDEADKMIDAYFREMQRRLMEDIK 411
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 478 AVCMHGDKTQQKEMKFCISSR 540
A+C+HGD T+ KE F I+ R
Sbjct: 655 AICVHGDMTKTKETTFDITFR 675
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 137 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 238
MGFE I I+ + R+T ++SAT EV+ L
Sbjct: 1 MGFEASINTILGYLPKQRRTGLFSATQTDEVEAL 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,622
Number of Sequences: 59808
Number of extensions: 354008
Number of successful extensions: 930
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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