Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20230
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       91   7e-21
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   6.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   6.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   6.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   6.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   6.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 91.1 bits (216), Expect = 7e-21
 Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
 Frame = +2

Query: 11  LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII--EQIRP 184
           L  G  I++ATPGRL+DF+EKG        +LVLDEADRMLDMGF P I K++  E + P
Sbjct: 320 LSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVP 379

Query: 185 --DRQTLMWSATWPKEVKKLAEDYL 253
             +RQTLM+SAT+P EV+ LA  +L
Sbjct: 380 LGERQTLMFSATFPDEVQHLARRFL 404



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 26/105 (24%), Positives = 55/105 (52%)
 Frame = +1

Query: 199 DVVSYLAQRSKETC*GLLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEI 378
           D V +LA+R        L +Y+ + +G +  + +       ++ + ++K++ L  +L+  
Sbjct: 394 DEVQHLARR-------FLNNYLFLAVGIVGGACSDVEQNFYEVAR-NKKKDLLKEILERE 445

Query: 379 GQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
             S   G  T++FVE K+KA+ I+  +    +P   +HGD+ Q++
Sbjct: 446 NDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQ 489



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +3

Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
           +R+E L  FK GR SILVAT VA RGL
Sbjct: 489 QREEALADFKSGRMSILVATAVAARGL 515


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 334 EHEKENKLNVLLQEIG 381
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 46  WSSNDYFYSPLQAR 5
           WS+ DY Y  ++AR
Sbjct: 160 WSTIDYTYDSIEAR 173


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 YRTSSLSVEFYRHAYKQLASHIS 461
           Y TSS S+    H ++  +SH S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYS 232


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 YRTSSLSVEFYRHAYKQLASHIS 461
           Y TSS S+    H ++  +SH S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYS 232


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 YRTSSLSVEFYRHAYKQLASHIS 461
           Y TSS S+    H ++  +SH S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYS 232


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 YRTSSLSVEFYRHAYKQLASHIS 461
           Y TSS S+    H ++  +SH S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYS 232


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 YRTSSLSVEFYRHAYKQLASHIS 461
           Y TSS S+    H ++  +SH S
Sbjct: 199 YATSSNSLRSRTHGFQHTSSHYS 221


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 529 YRTSSLSVEFYRHAYKQLASHIS 461
           Y TSS S+    H ++  +SH S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYS 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,861
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)