Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20230
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 141 4e-34
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 141 4e-34
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 137 6e-33
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 118 3e-27
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 118 3e-27
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 116 2e-26
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 116 2e-26
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 116 2e-26
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 110 6e-25
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 108 2e-24
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 108 2e-24
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 108 2e-24
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 105 2e-23
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 103 1e-22
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 103 1e-22
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 92 3e-19
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 89 2e-18
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 89 3e-18
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 84 8e-17
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 83 1e-16
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 82 3e-16
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 80 1e-15
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 77 9e-15
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 73 1e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 73 1e-13
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 73 1e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 73 1e-13
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 70 1e-12
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 70 1e-12
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 69 2e-12
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 69 3e-12
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 68 4e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 68 5e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 67 9e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 66 1e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 66 2e-11
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 66 2e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 66 2e-11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 66 2e-11
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 65 3e-11
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 65 3e-11
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 64 7e-11
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 64 7e-11
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 64 7e-11
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 64 7e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 62 3e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 62 4e-10
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 62 4e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 61 5e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 61 6e-10
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 60 1e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 52 2e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 52 2e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 52 2e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 1e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 49 3e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 48 4e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 47 8e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 45 4e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 8e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 42 3e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 41 7e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.004
At2g28600.1 68415.m03476 expressed protein 37 0.012
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 29 3.1
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 28 4.1
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 4.1
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 7.1
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 27 7.1
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 27 7.1
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 7.1
At1g74790.1 68414.m08665 expressed protein contains similarity t... 27 9.4
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 141 bits (341), Expect = 4e-34
Identities = 66/88 (75%), Positives = 75/88 (85%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L RGVEIVIATPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDR
Sbjct: 285 LRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 344
Query: 191 QTLMWSATWPKEVKKLAEDYLEITFRSI 274
QTL+WSATWP+EV+ LA +L +++I
Sbjct: 345 QTLLWSATWPREVETLARQFLRDPYKAI 372
Score = 75.4 bits (177), Expect = 3e-14
Identities = 38/88 (43%), Positives = 56/88 (63%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L D + IGS L AN +I Q+++I EK N+L LL+++ G+K +IFVETK
Sbjct: 365 LRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETK 420
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
R + ++R +R GWPA+ +HGDKTQ +
Sbjct: 421 RGCDQVTRQLRMDGWPALAIHGDKTQSE 448
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +3
Query: 468 WLASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
W A ++ + +ERD VL +FK GR+ I+ ATDVA RGL
Sbjct: 435 WPALAIHGDK-TQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 141 bits (341), Expect = 4e-34
Identities = 66/88 (75%), Positives = 75/88 (85%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L RGVEIVIATPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDR
Sbjct: 285 LRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 344
Query: 191 QTLMWSATWPKEVKKLAEDYLEITFRSI 274
QTL+WSATWP+EV+ LA +L +++I
Sbjct: 345 QTLLWSATWPREVETLARQFLRDPYKAI 372
Score = 75.4 bits (177), Expect = 3e-14
Identities = 38/88 (43%), Positives = 56/88 (63%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
L D + IGS L AN +I Q+++I EK N+L LL+++ G+K +IFVETK
Sbjct: 365 LRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETK 420
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
R + ++R +R GWPA+ +HGDKTQ +
Sbjct: 421 RGCDQVTRQLRMDGWPALAIHGDKTQSE 448
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +3
Query: 468 WLASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
W A ++ + +ERD VL +FK GR+ I+ ATDVA RGL
Sbjct: 435 WPALAIHGDK-TQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 137 bits (331), Expect = 6e-33
Identities = 62/88 (70%), Positives = 75/88 (85%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L++GVEIVIATPGRLID +E TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDR
Sbjct: 219 LQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDR 278
Query: 191 QTLMWSATWPKEVKKLAEDYLEITFRSI 274
QTL WSATWPKEV++L++ +L ++ I
Sbjct: 279 QTLYWSATWPKEVEQLSKKFLYNPYKVI 306
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/81 (43%), Positives = 54/81 (66%)
Frame = +1
Query: 265 QINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 444
++ IGS L AN I QIVD+ E +K NKL LL++I G++ ++F++TK+ +
Sbjct: 304 KVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCDQ 359
Query: 445 ISRNIRRYGWPAVCMHGDKTQ 507
I+R +R GWPA+ +HGDK+Q
Sbjct: 360 ITRQLRMDGWPALSIHGDKSQ 380
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ ERD VL +F+ G++ I+ ATDVA RGL
Sbjct: 379 SQAERDWVLSEFRSGKSPIMTATDVAARGL 408
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 118 bits (284), Expect = 3e-27
Identities = 54/81 (66%), Positives = 67/81 (82%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
+ERGV+IV+ATPGRL D LE +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ R
Sbjct: 348 IERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKR 407
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTLM++ATWPKEV+K+A D L
Sbjct: 408 QTLMYTATWPKEVRKIAADLL 428
Score = 64.1 bits (149), Expect = 7e-11
Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 LLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVE 423
LL + Q+NIG++ +L AN +I Q +++ EK ++L +L+ SQEPG+K IIF
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILR----SQEPGSKIIIFCS 482
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQ 507
TKR + ++RN+ R + A +HGDK+Q
Sbjct: 483 TKRMCDQLARNLTR-TFGAAAIHGDKSQ 509
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ ERD+VL QF+ GR +LVATDVA RGL
Sbjct: 508 SQAERDDVLNQFRSGRTPVLVATDVAARGL 537
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 118 bits (284), Expect = 3e-27
Identities = 55/81 (67%), Positives = 66/81 (81%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LERG +IV+ATPGRL D LE + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P R
Sbjct: 554 LERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 613
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTLM++ATWPKEV+K+A D L
Sbjct: 614 QTLMYTATWPKEVRKIASDLL 634
Score = 67.3 bits (157), Expect = 7e-12
Identities = 38/88 (43%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 LLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVE 423
LL + +Q+NIG + +L+AN I Q V++ + EKE +L +L+ SQE G+K IIF
Sbjct: 633 LLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR----SQERGSKVIIFCS 688
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQ 507
TKR ++++R++ R+ + AV +HGDKTQ
Sbjct: 689 TKRLCDHLARSVGRH-FGAVVIHGDKTQ 715
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD VL QF+ G++ +L+ATDVA RGL
Sbjct: 717 ERDWVLNQFRSGKSCVLIATDVAARGL 743
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 116 bits (278), Expect = 2e-26
Identities = 54/81 (66%), Positives = 67/81 (82%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I R
Sbjct: 277 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 336
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTLM++ATWPK V+K+A D L
Sbjct: 337 QTLMYTATWPKGVRKIAADLL 357
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 LLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVE 423
LL + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K IIF
Sbjct: 356 LLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCS 411
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQ 507
TKR + ++RN+ R + A +HGDK+Q
Sbjct: 412 TKRMCDQLTRNLTRQ-FGAAAIHGDKSQ 438
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD VL QF+ GR +LVATDVA RGL
Sbjct: 440 ERDNVLNQFRSGRTPVLVATDVAARGL 466
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 116 bits (278), Expect = 2e-26
Identities = 54/81 (66%), Positives = 67/81 (82%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I R
Sbjct: 277 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 336
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTLM++ATWPK V+K+A D L
Sbjct: 337 QTLMYTATWPKGVRKIAADLL 357
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 LLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVE 423
LL + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K IIF
Sbjct: 356 LLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCS 411
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQ 507
TKR + ++RN+ R + A +HGDK+Q
Sbjct: 412 TKRMCDQLTRNLTRQ-FGAAAIHGDKSQ 438
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD VL QF+ GR +LVATDVA RGL
Sbjct: 440 ERDNVLNQFRSGRTPVLVATDVAARGL 466
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 116 bits (278), Expect = 2e-26
Identities = 54/81 (66%), Positives = 67/81 (82%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I R
Sbjct: 277 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 336
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTLM++ATWPK V+K+A D L
Sbjct: 337 QTLMYTATWPKGVRKIAADLL 357
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 LLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVE 423
LL + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K IIF
Sbjct: 356 LLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCS 411
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQ 507
TKR + ++RN+ R + A +HGDK+Q
Sbjct: 412 TKRMCDQLTRNLTRQ-FGAAAIHGDKSQ 438
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD VL QF+ GR +LVATDVA RGL
Sbjct: 440 ERDNVLNQFRSGRTPVLVATDVAARGL 466
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 110 bits (265), Expect = 6e-25
Identities = 52/86 (60%), Positives = 65/86 (75%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ G EIV+ATPGRLID L+ + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDR
Sbjct: 348 LKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDR 407
Query: 191 QTLMWSATWPKEVKKLAEDYLEITFR 268
QTL++SAT P +V+KLA + L R
Sbjct: 408 QTLLFSATMPWKVEKLAREILSDPIR 433
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ R E L +FK G +L+ATDVA RGL
Sbjct: 508 DQASRMETLQKFKSGVHHVLIATDVAARGL 537
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 108 bits (260), Expect = 2e-24
Identities = 52/85 (61%), Positives = 70/85 (82%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD 187
LERGV+I++ATPGRL D LE+G +LQ +L LDEADRMLDMGFEPQIRKI++Q+ P
Sbjct: 271 LERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPP 330
Query: 188 ---RQTLMWSATWPKEVKKLAEDYL 253
RQT+++SAT+P+E+++LA D+L
Sbjct: 331 PGVRQTMLFSATFPREIQRLASDFL 355
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVE 423
L +YI + +G + S+ I+Q V+ + +K + L LL Q +Q A T++FVE
Sbjct: 355 LSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVE 413
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
TK+ A+++ + G+PA +HGD++QQ+
Sbjct: 414 TKKGADSLENWLCINGFPATTIHGDRSQQE 443
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ L FK GR ILVATDVA RGL
Sbjct: 443 EREVALRSFKTGRTPILVATDVAARGL 469
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 108 bits (260), Expect = 2e-24
Identities = 51/86 (59%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 175
+ L+RG EIV+ TPGR+ID L + TNL+R TYLV+DEADRM DMGFEPQI +I++
Sbjct: 514 SELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 573
Query: 176 IRPDRQTLMWSATWPKEVKKLAEDYL 253
IRPDRQT+++SAT+P++V+ LA L
Sbjct: 574 IRPDRQTVLFSATFPRQVETLARKVL 599
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 108 bits (260), Expect = 2e-24
Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI---- 178
LERGV+I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+
Sbjct: 284 LERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPP 343
Query: 179 RPDRQTLMWSATWPKEVKKLAEDYL 253
R RQTL++SAT+P+E+++LA D+L
Sbjct: 344 RGVRQTLLFSATFPREIQRLAADFL 368
Score = 51.2 bits (117), Expect = 5e-07
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVE 423
L +YI + +G + S+ I+Q V+ + +K + L LL Q Q A T++FVE
Sbjct: 368 LANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVE 426
Query: 424 TKRKAENISRNIRRYGWPAVCMHGDKTQQKE---MKFCISSRKVVLV 555
TKR A+++ + G+PA +HGD+TQQ+ +K S R +LV
Sbjct: 427 TKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILV 473
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ L FK GR ILVATDVA RGL
Sbjct: 456 EREVALKAFKSGRTPILVATDVAARGL 482
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 105 bits (253), Expect = 2e-23
Identities = 50/86 (58%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 175
+ L+RG EIV+ TPGR+ID L + TNL+R T+LV+DEADRM DMGFEPQI +II+
Sbjct: 647 SELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQN 706
Query: 176 IRPDRQTLMWSATWPKEVKKLAEDYL 253
IRP+RQT+++SAT+P++V+ LA L
Sbjct: 707 IRPERQTVLFSATFPRQVETLARKVL 732
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/87 (26%), Positives = 51/87 (58%)
Frame = +1
Query: 247 LLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVET 426
+L ++I +G + N +I Q+V++ E ++ +L L+ +G+ E G K ++FV++
Sbjct: 731 VLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRL---LELLGEWSEKG-KILVFVQS 785
Query: 427 KRKAENISRNIRRYGWPAVCMHGDKTQ 507
+ K + + R++ + +P + +HG K Q
Sbjct: 786 QEKCDALYRDMIKSSYPCLSLHGGKDQ 812
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ T+R+ + FK ++L+AT VA RGL
Sbjct: 811 DQTDRESTISDFKNDVCNLLIATSVAARGL 840
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 103 bits (246), Expect = 1e-22
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI---- 178
LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+
Sbjct: 276 LERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPP 335
Query: 179 RPDRQTLMWSATWPKEVKKLAEDYL 253
R RQT+++SAT+P ++++LA D++
Sbjct: 336 RGVRQTMLFSATFPSQIQRLAADFM 360
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/88 (34%), Positives = 52/88 (59%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
+ +YI + +G + S+ I Q V+ QE +K + L LL ++Q+ + T++FVETK
Sbjct: 360 MSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETK 418
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
R A+ + + +PA +HGD+TQQ+
Sbjct: 419 RGADTLENWLCMNEFPATSIHGDRTQQE 446
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ L FK GR ILVATDVA RGL
Sbjct: 446 EREVALRSFKTGRTPILVATDVAARGL 472
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 103 bits (246), Expect = 1e-22
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI---- 178
LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+
Sbjct: 276 LERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPP 335
Query: 179 RPDRQTLMWSATWPKEVKKLAEDYL 253
R RQT+++SAT+P ++++LA D++
Sbjct: 336 RGVRQTMLFSATFPSQIQRLAADFM 360
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/88 (34%), Positives = 52/88 (59%)
Frame = +1
Query: 250 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETK 429
+ +YI + +G + S+ I Q V+ QE +K + L LL ++Q+ + T++FVETK
Sbjct: 360 MSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETK 418
Query: 430 RKAENISRNIRRYGWPAVCMHGDKTQQK 513
R A+ + + +PA +HGD+TQQ+
Sbjct: 419 RGADTLENWLCMNEFPATSIHGDRTQQE 446
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ L FK GR ILVATDVA RGL
Sbjct: 446 EREVALRSFKTGRTPILVATDVAARGL 472
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 184
+++ GV+IVI TPGRL D +E L +++VLDEADRMLDMGFE +R I+
Sbjct: 236 SAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNK 295
Query: 185 DRQTLMWSATWPKEVKKLAEDYLE 256
RQ +M+SATWP +V KLA+++++
Sbjct: 296 VRQMVMFSATWPLDVHKLAQEFMD 319
Score = 67.3 bits (157), Expect = 7e-12
Identities = 29/87 (33%), Positives = 58/87 (66%)
Frame = +1
Query: 262 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 441
I++ IGS+ L+ANH+++QI+++ E ++ +L LL++ +SQ+ + ++F K +AE
Sbjct: 323 IKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQK--NRVLVFALYKVEAE 380
Query: 442 NISRNIRRYGWPAVCMHGDKTQQKEMK 522
+ R +++ GW AV +HG+K Q + +
Sbjct: 381 RLERFLQQRGWKAVSIHGNKAQSERTR 407
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 459 QEIWLASCLYAWR*NSTERDEVLYQFKEGRASILVATDVAPRGL 590
Q W A ++ + S ER L FKEG +LVATDVA RGL
Sbjct: 388 QRGWKAVSIHGNKAQS-ERTRSLSLFKEGSCPLLVATDVAARGL 430
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 89.0 bits (211), Expect = 2e-18
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +2
Query: 5 TSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 184
++L RGV++V+ TPGR+ID +E + L YLVLDEAD+ML +GFE + I+E +
Sbjct: 223 SALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT 282
Query: 185 DRQTLMWSATWPKEVKKLAEDYLE 256
RQ++++SAT P VKKLA YL+
Sbjct: 283 KRQSMLFSATMPTWVKKLARKYLD 306
Score = 34.3 bits (75), Expect = 0.062
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R+ L F++G+ ++LVATDVA RGL
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGL 414
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 397 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
G KTI+F +TKR A+ +S + +HGD +Q +
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQ 388
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
++RGV IV+ATPGRL D L K +L C YL LDEADR++D+GFE IR++ + + R
Sbjct: 275 VKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQR 334
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTL++SAT P +++ A L
Sbjct: 335 QTLLFSATMPTKIQIFARSAL 355
Score = 36.3 bits (80), Expect = 0.015
Identities = 27/94 (28%), Positives = 51/94 (54%)
Frame = +1
Query: 262 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 441
+ +N+G +AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K +
Sbjct: 359 VTVNVGRAG-AANLDVIQEVEYVKQ---EAKIVYLLECLQKTSPP---VLIFCENKADVD 411
Query: 442 NISRNIRRYGWPAVCMHGDKTQQKEMKFCISSRK 543
+I + G AV +HG K Q++ ++ ISS K
Sbjct: 412 DIHEYLLLKGVEAVAIHGGK-DQEDREYAISSFK 444
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+R+ + FK G+ +LVATDVA +GL
Sbjct: 435 DREYAISSFKAGKKDVLVATDVASKGL 461
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 83.8 bits (198), Expect = 8e-17
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 17/101 (16%)
Frame = +2
Query: 2 GTSLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE--- 172
G + +G EIVIATPGRLID LE+ L +C Y+VLDEADRM+DMGFEPQ+ +++
Sbjct: 433 GLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMP 492
Query: 173 --QIRPD------------RQTLMWSATWPKEVKKLAEDYL 253
++P+ R T M+SAT P V++LA YL
Sbjct: 493 SSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYL 533
Score = 44.4 bits (100), Expect = 6e-05
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +1
Query: 307 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVC 486
I Q V + +E EK +L LL E+G+ I+FV TK+ ++I++N+ + G+
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKT-----AIVFVNTKKNCDSIAKNLDKAGYRVTT 605
Query: 487 MHGDKTQQK 513
+HG K+Q++
Sbjct: 606 LHGGKSQEQ 614
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
+++GV IV+ATPGRL D L K +L C L LDEADR++D+GFE IR + + + R
Sbjct: 226 VKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQR 285
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
QTL++SAT P +++ A L
Sbjct: 286 QTLLFSATMPAKIQIFATSAL 306
Score = 32.7 bits (71), Expect = 0.19
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +1
Query: 262 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 441
+ +N+G +AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K +
Sbjct: 310 VTVNVGRAG-AANLDVIQEVEYVKQ---EAKIVYLLECLQKTTPP---VLIFCENKADVD 362
Query: 442 NISRNIRRYGWPAVCMHGDKTQQ 510
+I + G AV +HG K Q+
Sbjct: 363 DIHEYLLLKGVEAVAIHGGKDQE 385
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
+RD + FK G+ +LVATDVA +GL
Sbjct: 386 DRDYAISLFKAGKKDVLVATDVASKGL 412
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 81.8 bits (193), Expect = 3e-16
Identities = 34/81 (41%), Positives = 56/81 (69%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ GV++ + TPGR+ID +++G NL ++VLDEAD+ML +GF + I+E++ R
Sbjct: 223 LDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q++M+SAT P ++ L + YL
Sbjct: 283 QSMMFSATMPSWIRSLTKKYL 303
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ ++R+ L F++G +ILVATDVA RGL
Sbjct: 383 SQSQRERTLAGFRDGHFNILVATDVAARGL 412
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 397 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
G K I+F +TKR A+ +S + R + +HGD +Q +
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQ 386
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 79.8 bits (188), Expect = 1e-15
Identities = 32/81 (39%), Positives = 55/81 (67%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L G+++ + TPGR+ID +++G NL ++VLDEAD+ML +GF + I++++ R
Sbjct: 235 LNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKR 294
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q++M+SAT P ++ L + YL
Sbjct: 295 QSMMFSATMPSWIRSLTKKYL 315
Score = 35.1 bits (77), Expect = 0.035
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ +R+ L F++G SILVATDVA RGL
Sbjct: 395 SQAQRERTLAGFRDGNFSILVATDVAARGL 424
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 397 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ-QKE 516
G K I+F +TKR A+ ++ + + + +HGD +Q Q+E
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRE 400
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 77.0 bits (181), Expect = 9e-15
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L + V +++ TPGR++D +KG L+ C LV+DEAD++L + F+P I ++I+ + R
Sbjct: 269 LYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESR 328
Query: 191 QTLMWSATWPKEVKKLAEDYLE 256
Q LM+SAT+P VK + YL+
Sbjct: 329 QILMFSATFPVTVKSFKDRYLK 350
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L + V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P + +I + R
Sbjct: 246 LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESR 305
Query: 191 QTLMWSATWPKEVKKLAEDYLEITF-RSI*DHYNFPQITTFF 313
Q LM+SAT+P VK + +L + ++ D IT F+
Sbjct: 306 QILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFY 347
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L + V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P + +I + R
Sbjct: 246 LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESR 305
Query: 191 QTLMWSATWPKEVKKLAEDYLEITF-RSI*DHYNFPQITTFF 313
Q LM+SAT+P VK + +L + ++ D IT F+
Sbjct: 306 QILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFY 347
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+P + ++I+ + +R
Sbjct: 239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNR 298
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q LM+SAT+P VK + +L
Sbjct: 299 QFLMFSATFPVTVKAFKDRHL 319
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+P + ++I+ + +R
Sbjct: 239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNR 298
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q LM+SAT+P VK + +L
Sbjct: 299 QFLMFSATFPVTVKAFKDRHL 319
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+I++ATPGRL D +E T L+ LVLDEAD +LDMGF I +II + +RQT
Sbjct: 184 QILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQT 243
Query: 197 LMWSATWPKEVKKL 238
++SAT P+EV+++
Sbjct: 244 FLFSATVPEEVRQI 257
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/76 (43%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+I+IATPGRL+D +E T+ L ++DEAD +LD+GF+ + KII+ + RQ+
Sbjct: 506 QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQS 565
Query: 197 LMWSATWPKEVKKLAE 244
L++SAT PKEV+++++
Sbjct: 566 LLFSATIPKEVRRVSQ 581
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+I+IATPGRL+D +E T+ L ++DEAD +LD+GF + KII+ + RQ+
Sbjct: 459 QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQS 518
Query: 197 LMWSATWPKEVKKLAE 244
L++SAT PKEV+++++
Sbjct: 519 LLFSATIPKEVRRVSQ 534
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+I++ATPGRL D +E + T L LVLDEAD +LDMGF I +II + RQT
Sbjct: 512 QILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQT 571
Query: 197 LMWSATWPKEVKKL 238
++SAT P+EV+++
Sbjct: 572 FLFSATVPEEVRQI 585
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 187
L +G +++IATPGRL+ L E L+ Y+V DEAD + MGF Q+ +I+ Q+ +
Sbjct: 145 LTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSEN 204
Query: 188 RQTLMWSATWPKEVKKLAE 244
RQTL++SAT P + + A+
Sbjct: 205 RQTLLFSATLPSALAEFAK 223
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+RGV+IV+ TPGR+ D +E+ + + VLDEAD ML MGF + I+ ++
Sbjct: 221 LKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDST 280
Query: 191 --QTLMWSATWPKEVKKLAEDYLE 256
QTL++SAT P VK ++ +L+
Sbjct: 281 KVQTLLFSATLPSWVKNISNRFLK 304
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 507 TERDEVLYQFKEGRASILVATDVAPRGL 590
++R+ L F+ G+ + LVAT+VA RGL
Sbjct: 383 SQREVTLAGFRNGKFATLVATNVAARGL 410
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 66.9 bits (156), Expect = 9e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 187
L +GV +++ATPGRL+D LE + + +LV+DEADR+L+ FE ++KI+ +
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT 332
Query: 188 RQTLMWSATWPKEVKKLA 241
RQT ++SAT +V+ LA
Sbjct: 333 RQTSLFSATQSAKVEDLA 350
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 66.5 bits (155), Expect = 1e-11
Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 181
+L + +++ATPGRL D + KG + L+ YLVLDEADR+L+ FE + +I+E+I
Sbjct: 135 ALGKRPHVIVATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIP 193
Query: 182 PDRQTLMWSATWPKEVKKL 238
+R+T ++SAT K+V+KL
Sbjct: 194 LERKTFLFSATMTKKVRKL 212
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 507 TERDEVLYQFKEGRASILVATDVAPRGL 590
++R L +FK G +ILV TDVA RGL
Sbjct: 297 SKRLGALNKFKAGECNILVCTDVASRGL 324
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
+++GVE++I TPGR++D L K T L VLDE D ML GF Q+ +I + +
Sbjct: 233 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQP 291
Query: 191 QTLMWSATWPKEVKKL 238
Q L++SAT +EV+K+
Sbjct: 292 QVLLFSATISREVEKV 307
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
+++GVE++I TPGR++D L K T L VLDE D ML GF Q+ +I + +
Sbjct: 96 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQP 154
Query: 191 QTLMWSATWPKEVKKL 238
Q L++SAT +EV+K+
Sbjct: 155 QVLLFSATISREVEKV 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 202
+IV+ATPGR+ID L + +L L+LDEADR+L GF +I +++ RQT++
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 203 WSATWPKEVKKLAE 244
+SAT +EVK+L +
Sbjct: 350 FSATMTEEVKELVK 363
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/81 (38%), Positives = 48/81 (59%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LERGV V TPGR+ D +++G+ + LVLDE+D ML G + QI + + D
Sbjct: 137 LERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDI 196
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q + SAT P+E+ ++ E ++
Sbjct: 197 QVCLISATLPQEILEMTEKFM 217
Score = 31.1 bits (67), Expect = 0.57
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD+++ QF+ ++ +L+A+DV RG+
Sbjct: 299 ERDDIMNQFRSFKSRVLIASDVWARGI 325
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
+ IIF T++K + ++ +R + MHGDK Q++
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKE 299
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 ERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
E G ++I TPGRL D +E+ + + L+LDEADR+L+MGF+ Q+ II ++ R
Sbjct: 140 EEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQR 199
Query: 191 QTLMWSATWPKEVKKLAE 244
+T ++SAT + V++LA+
Sbjct: 200 RTGLFSATQTEGVEELAK 217
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
RD+ L F + + L+ TDVA RGL
Sbjct: 317 RDKALASFTKASSGALLCTDVAARGL 342
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
LE GV +V TPGR+ D +++ + + L+LDE+D ML GF+ QI + + PD
Sbjct: 150 LEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDL 209
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q + SAT P E+ ++ ++
Sbjct: 210 QVCLVSATLPHEILEMTSKFM 230
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 403 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQK 513
+ +IF TKRK + +S +R + + MHGD Q++
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKE 312
Score = 30.7 bits (66), Expect = 0.76
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ERD ++ +F+ G + +L+ TDV RG+
Sbjct: 312 ERDAIMNEFRSGDSRVLITTDVWARGI 338
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 64.1 bits (149), Expect = 7e-11
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+I++ATPGRL D ++ + T L LVLDEAD +LDMGF +I +II + RQT
Sbjct: 210 QILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQT 269
Query: 197 LMWSATWPKEVKKL 238
++SAT EV+++
Sbjct: 270 FLFSATVSDEVRQI 283
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 64.1 bits (149), Expect = 7e-11
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ GV +V+ TPGR+ D L++ + VLDEAD ML GF+ QI I + + P
Sbjct: 154 LQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q ++SAT P E ++ ++
Sbjct: 214 QVGVFSATMPPEALEITRKFM 234
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
RD ++ +F+ G + +L+ TD+ RG+
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGI 342
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R
Sbjct: 140 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 199
Query: 191 QTLMWSATWPKEVKKLAE 244
+T ++SAT + V LA+
Sbjct: 200 RTGLFSATQTQAVADLAK 217
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
RD L F E + +L+ TDVA RGL
Sbjct: 308 RDTALASFTEASSGVLLCTDVAARGL 333
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 192
Query: 191 QTLMWSATWPKEVKKLAE 244
+T ++SAT + V LA+
Sbjct: 193 RTGLFSATQTQAVADLAK 210
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
RD L F E + +L+ TDVA RGL
Sbjct: 281 RDTALASFTEASSGVLLCTDVAARGL 306
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +2
Query: 23 VEIVIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
+ I++ PGRL+ +++ T N + + L+LDEADR+LD F+ Q+ II Q+ RQT
Sbjct: 194 MNILVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQT 252
Query: 197 LMWSATWPKEVKKLA 241
L++SAT K+VK LA
Sbjct: 253 LLFSATQTKKVKDLA 267
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 346 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISR--NIRRYGWPAVCMHGDKTQQKEM 519
E KL++L I ++ ++F+ TK++ + + N R G P +HG +Q+K M
Sbjct: 301 EKKLDMLWSFI--KTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRM 358
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 20 GVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 196
G +VIATPGRL+D L+ + + LV+DEADR+L+ FE + KI++ + RQT
Sbjct: 211 GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQT 270
Query: 197 LMWSATWPKEVKKLA 241
++SAT +VK LA
Sbjct: 271 ALFSATQTSKVKDLA 285
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 501 NSTERDEVLYQFKEGRASILVATDVAPRGL 590
+ R + + F + + IL+ TDVA RGL
Sbjct: 369 DQNRRTKTFFDFMKAKKGILLCTDVAARGL 398
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ GV +V+ TPGR+ D L + + VLDEAD ML GF+ QI I + + P
Sbjct: 154 LQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q ++SAT P E ++ ++
Sbjct: 214 QVGVFSATMPPEALEITRKFM 234
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
RD ++ +F+ G + +L+ TD+ RG+
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGI 342
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 61.3 bits (142), Expect = 5e-10
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTN---LQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 178
SL IVI TPGR+ LE R +LVLDEADR+LD+GF+ ++R I + +
Sbjct: 172 SLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCL 231
Query: 179 RPDRQTLMWSATWPKEVKKLAE 244
RQTL++SAT ++ L E
Sbjct: 232 PKSRQTLLFSATMTSNLQALLE 253
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
R L +FK G+ IL+ATDVA RGL
Sbjct: 341 RLSALSKFKSGKVPILLATDVASRGL 366
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 60.9 bits (141), Expect = 6e-10
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP- 184
SL +++V+ TPGR++ +E+G YLVLDEAD M D GF P+IRK + +
Sbjct: 235 SLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQR 294
Query: 185 -----DR--QTLMWSATWPKEVKKLAED 247
D+ QT++ +AT V+KL ++
Sbjct: 295 ALKTNDQGFQTVLVTATMTMAVQKLVDE 322
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 346 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEMK 522
E+KL LLQ + S G+K ++F T + + + V HG+ ++ ++
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVE 411
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
L+ GV +V+ TPGR+ D L + + VLDEAD ML GF+ QI I + +
Sbjct: 156 LQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKV 215
Query: 191 QTLMWSATWPKEVKKLAEDYL 253
Q ++SAT P E ++ ++
Sbjct: 216 QVGVFSATMPPEALEITRKFM 236
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RDEVLYQFKEGRASILVATDVAPRGL 590
RD ++ +F+ G + +L+ TD+ RG+
Sbjct: 319 RDIIMREFRSGSSRVLITTDLLARGI 344
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 205
IV+ TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 206 SATWPKEVKKLAEDYLE 256
SAT KE++ + + +++
Sbjct: 229 SATLSKEIRPVCKKFMQ 245
Score = 40.7 bits (91), Expect = 7e-04
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Frame = +1
Query: 193 DFDVVSYLAQRSKE---TC*GLLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 363
D V+ + A SKE C + D ++I + H ++Q E EK KLN
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLND 281
Query: 364 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEM 519
LL + +Q +IFV++ +A +++ + +P++C+H +Q++ +
Sbjct: 282 LLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL 328
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 534 FKEGRASILVATDVAPRGL 590
FKEG ILVATD+ RG+
Sbjct: 334 FKEGHKRILVATDLVGRGI 352
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 205
IV+ TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 145
Query: 206 SATWPKEVKKLAEDYLE 256
SAT KE++ + + +++
Sbjct: 146 SATLSKEIRPVCKKFMQ 162
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Frame = +1
Query: 193 DFDVVSYLAQRSKE---TC*GLLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 363
D V+ + A SKE C + D ++I + H ++Q E EK KLN
Sbjct: 139 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLND 198
Query: 364 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEM 519
LL + +Q +IFV++ +A +++ + +P++C+H +Q++ +
Sbjct: 199 LLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL 245
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 534 FKEGRASILVATDVAPRGL 590
FKEG ILVATD+ RG+
Sbjct: 251 FKEGHKRILVATDLVGRGI 269
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 205
IV+ TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 206 SATWPKEVKKLAEDYLE 256
SAT KE++ + + +++
Sbjct: 229 SATLSKEIRPVCKKFMQ 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Frame = +1
Query: 193 DFDVVSYLAQRSKE---TC*GLLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 363
D V+ + A SKE C + D ++I + H ++Q E EK KLN
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLND 281
Query: 364 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQKEM 519
LL + +Q +IFV++ +A +++ + +P++C+H +Q++ +
Sbjct: 282 LLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL 328
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 534 FKEGRASILVATDVAPRGL 590
FKEG ILVATD+ RG+
Sbjct: 334 FKEGHKRILVATDLVGRGI 352
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI---------- 178
IV+ TPGR+ + + G + C +LVLDE D +L F I +I+E +
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKG 305
Query: 179 ----RPDRQTLMWSATWPKEVKKLAEDY 250
R +RQT++ SAT P V + A+ +
Sbjct: 306 EVDERANRQTILVSATVPFSVIRAAKSW 333
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIEQIRP 184
+LE+GV+++IATPGR + +G L +LDE D + D FE ++ +I
Sbjct: 498 NLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPV 557
Query: 185 DRQTLMWSATWPKEV-KKLAE 244
Q L +AT P E+ KL E
Sbjct: 558 TAQYLFVTATLPLEIYNKLVE 578
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 346 ENKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRR 465
+NK LLQ + + P +KTIIF +ET RK ENI + + R
Sbjct: 620 QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFKRVDR 660
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/55 (38%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKIIE 172
L +G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G+ +I +II+
Sbjct: 152 LRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIK 206
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 8 SLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 181
+LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + +++ +
Sbjct: 161 NLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQ 219
Query: 182 PDRQTLMWSAT 214
+L S T
Sbjct: 220 TSDDSLFPSFT 230
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Frame = +2
Query: 11 LERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 172
L+ EIV+ATPGRL + + EK L ++ VLDEADRM++ G +++ I++
Sbjct: 326 LKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.0 bits (99), Expect = 8e-05
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLM 202
+++I+TP RL ++ +L + YLVLDE+D++ + QI +++ P +
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSL 319
Query: 203 WSATWPKEVKKLAEDYLEITFRSI*DHYNFPQITTFFKL 319
+SAT P V++LA + R I N T KL
Sbjct: 320 FSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKL 358
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 510 ERDEVLYQFKEGRASILVATDVAPRGL 590
ER+ + QF+ G +L+ATDV RG+
Sbjct: 418 ERENAVDQFRAGEKWVLIATDVIARGM 444
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQT 196
+VI TPG L ++ L LV DEAD ML GF +I K I ++ P+ Q
Sbjct: 217 VVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQV 276
Query: 197 LMWSATWPKEVK 232
L++SAT+ + VK
Sbjct: 277 LLFSATFNETVK 288
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Frame = +1
Query: 340 EKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQ--- 510
+++NK+ V+ +I + + G +TIIFV+TK A+ + + + G+ +HG+ T+
Sbjct: 322 KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRD 380
Query: 511 ---KEMKFCIS 534
KE K C++
Sbjct: 381 KIVKEFKECLT 391
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 507 TERDEVLYQFKEGRASILVATDVAPRG 587
++RD+++ +FKE +L+ATDV RG
Sbjct: 377 SDRDKIVKEFKECLTQVLIATDVIARG 403
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.7 bits (91), Expect = 7e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 193
EI+++TP + G T + + LVLDEAD +L G+E +R + I Q
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQ 233
Query: 194 TLMWSATWPKEVKKL 238
L+ SAT +V+KL
Sbjct: 234 CLLMSATTSSDVEKL 248
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +2
Query: 14 ERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIR 181
+R +I+++TP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I +R
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLR 266
Query: 182 PDRQ 193
D +
Sbjct: 267 FDEK 270
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/76 (21%), Positives = 39/76 (51%)
Frame = +2
Query: 26 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 205
E ++ATP RL++ + ++ + LV+DE + G+ ++ I + I QT+++
Sbjct: 248 EFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVF 307
Query: 206 SATWPKEVKKLAEDYL 253
+ ++ + + +L
Sbjct: 308 NNSFSASIIPAVQSFL 323
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +1
Query: 319 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 498
VD+ + + +K+ LL+E+ + G+K+I+F + + + + R + V + G
Sbjct: 853 VDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGT 912
Query: 499 KTQQKEMK 522
+QQ+ K
Sbjct: 913 LSQQQREK 920
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 74 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 74 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 190
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 47 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 157
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIEQIR--PDRQTL 199
I++AT L LEK + LV+DE D + + +RK++ RQT+
Sbjct: 203 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTV 262
Query: 200 MWSATWPKEVKKLAEDYLE 256
SA+ P+ K D ++
Sbjct: 263 FASASIPQH-KHFVHDCIQ 280
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 29 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIEQIR--PDRQTL 199
I++AT L LEK + LV+DE D + + +RK++ RQT+
Sbjct: 46 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTV 105
Query: 200 MWSATWPKEVKKLAEDYLE 256
SA+ P+ K D ++
Sbjct: 106 FASASIPQH-KHFVHDCIQ 123
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 47 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 157
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At1g74790.1 68414.m08665 expressed protein contains similarity to
hedgehog-interacting protein GI:4868122 from [Mus
musculus]
Length = 695
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 590 KPSRCNISCYKNTST 546
+PSRCN++C K ST
Sbjct: 636 RPSRCNLTCSKENST 650
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,166
Number of Sequences: 28952
Number of extensions: 253576
Number of successful extensions: 885
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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