Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20229
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 81 1e-16
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 28 1.3
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 27 3.0
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 3.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 4.0
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 5.3
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 7.0
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 9.3
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 81.4 bits (192), Expect = 1e-16
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 506 KWNLDPNASYVHICTNETIHGVEFDFIPDT--KGVPLIADMSSNIMSKKVDVSKFGVIYA 679
K+ D S V+ C NET+HGVEF+ P KG + D+SSN +S+K+D +K +I+A
Sbjct: 152 KFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHDIIFA 211
Query: 680 GAQKNIGTSGVALVIVREDLLNQALP 757
GAQKN G +G+ +V VR+ +L + P
Sbjct: 212 GAQKNAGPAGITVVFVRDSVLARPTP 237
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 115 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRS 237
+V NF AGPA + V E + NF+ G+ + E SHRS
Sbjct: 6 EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRS 46
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 561 IVSLVQICTYEALGSRF-HLSDQVCLHIYLSVVAPNLLSHIFSPPW 427
I ++C LG F +L++Q+ L ++ NL S F PPW
Sbjct: 91 ITFFCKLCVIFGLGFVFTYLAEQIVQDAKLPLLTVNLKSWKFEPPW 136
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -3
Query: 281 SHNILNFDISFMYVEER*LVSNKLIPEFSKFVNSFLII 168
+++++ D +F+YV+ER K+ PE SK ++ F+ I
Sbjct: 220 AYSLVTLDEAFLYVDER-----KVTPEVSKHLDGFVKI 252
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 648 TFFDIMFEDISAIKGTPFVS 589
TF+DI+FED+ + +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 672 ITPNFETSTFFDIMFEDISAIKGT 601
ITPN TS FFD++ +D G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 735 SSLTMTSATPDVPIFF*APAYITPNFETSTF 643
+ L++ S+TP P+ P Y TP+ S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 369 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 274
L+LK+ + I + H L A+CS ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 693 FF*APAYITPNFETSTFFDIMFEDISAIKGTPFVSGMKSNS 571
FF A PN S F IM +++ +KG + M ++S
Sbjct: 287 FFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKALLMNMPTSS 327
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 628 KHYVEES*CFKVWGDICWCSKEYWY 702
+H V F+++ + WC +YWY
Sbjct: 195 EHAVAPFFVFQIFCCVLWCLDDYWY 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,043
Number of Sequences: 5004
Number of extensions: 68730
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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