Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20229
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                          108   6e-24
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724     29   5.5  
03_06_0756 - 36032432-36033871                                         28   7.3  
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708...    28   7.3  
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902...    28   9.7  
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    28   9.7  
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    28   9.7  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score =  108 bits (259), Expect = 6e-24
 Identities = 51/86 (59%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
 Frame = +2

Query: 518 DPNASYVHICTNETIHGVEFDFIPDTKGVP--LIADMSSNIMSKKVDVSKFGVIYAGAQK 691
           +P A ++HIC+NETIHGVEF   P+ K     L+ADMSSN  SK VDVS+FG+IYAGAQK
Sbjct: 201 NPEARFLHICSNETIHGVEFKDYPEPKNKSGILVADMSSNFCSKPVDVSRFGLIYAGAQK 260

Query: 692 NIGTSGVALVIVREDLLNQALPTCPL 769
           N+G SGV + IVR+DL+  A P  P+
Sbjct: 261 NVGPSGVTIAIVRKDLVGSAQPITPV 286



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 118 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLMSK 264
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +   + K
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKK 113



 Score = 35.9 bits (79), Expect = 0.037
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 276 VRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLI-SRTGTADYVVTGAWSXXXXXXXXXYGK 452
           +R LL VPD ++V              PLNL  S +  AD+VV+G+WS         +  
Sbjct: 118 LRALLAVPDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSA 177

Query: 453 VNLVLPPTD-KYEDIP 497
            ++     D KY  +P
Sbjct: 178 ASVAWSGKDGKYTSLP 193


>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
          Length = 302

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 668 VIYAGAQKNIGTSGVALVIVREDLLNQALPTCPLY 772
           V++   +K  GT+G+   I    LL+Q  P CP +
Sbjct: 56  VVHFTRKKEAGTAGLDSAIAISSLLSQGSPECPTF 90


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 493 MSSYLSVGGSTKFTFPYFFASLAALADHAPVT 398
           + SYLS  G    T P  FAS  ALA H P+T
Sbjct: 162 LKSYLSAQG---VTLPTLFASALALALHVPLT 190


>02_02_0134 +
           7082462-7082627,7084199-7084325,7084404-7084611,
           7084864-7084990,7085071-7085255,7085332-7085454,
           7085777-7085836,7085980-7086117
          Length = 377

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 123 KHFRHFHLFIYLINSYTTLFYQTDTIVLRRVAVRCGSVLVP 1
           KH     LF  L  +Y    YQ DT V   + V+CG  +VP
Sbjct: 295 KHQGWRQLFSGLSINYLKELYQLDTSVCAFIYVQCGEKVVP 335


>04_03_0113 +
           11388585-11388655,11388741-11388852,11390182-11390235,
           11390386-11390456,11390560-11390641,11390741-11390837,
           11390914-11391053
          Length = 208

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 526 IGIKVPFV*SGMSSYLSVGGSTKFTFPYFFASLAALADHAPV 401
           I I +P++ +     L +     F+F +F+AS+ +LA + PV
Sbjct: 122 IYIALPYMKASEKYCLRMPNKWNFSFDFFYASILSLAIYVPV 163


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 468 PPTDKYEDIPDQTNGTLIPM 527
           PP +   D+P++T GT IPM
Sbjct: 53  PPAETIPDMPEETEGTGIPM 72


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = -2

Query: 363 LKEQLQIDQDPHQLKTALCSCPVHLISFAQHPEFRH*LHVC*RTMTCFQ*TNSRIFKICQ 184
           +KE  ++  +   +  + CS  +   SF  H E    LH C + +TC    +S +   C 
Sbjct: 44  IKEMFKLGFEVLHIYISTCS-KLERYSFCYHLEEAD-LHQCHQILTCTINGSSLVMIWCC 101

Query: 183 FILNNFID-FFWQFS-RSSAKIKHFRHFHLFIYLI 85
            + NN  + +F  F+     K K + HF  ++ LI
Sbjct: 102 HLANNSANCYFLHFTIVQHLKKKFYFHFQDYVDLI 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,442
Number of Sequences: 37544
Number of extensions: 382856
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)