Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20229
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   5.6  
SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/48 (56%), Positives = 31/48 (64%)
 Frame = +3

Query: 381 GTADYVVTGAWSXXXXXXXXXYGKVNLVLPPTDKYEDIPDQTNGTLIP 524
           G+ADY+VTGAWS         YGKVNLVLP T  Y+ IPD +  TL P
Sbjct: 42  GSADYIVTGAWSAKAVKEAEKYGKVNLVLPKTSTYDSIPDPSQWTLNP 89



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +1

Query: 115 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLE 222
           KV NF  GPAKLPE V +  + E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +2

Query: 506 KWNLDPNASYVHICTNETIHGVE 574
           +W L+P+ASYV+ C NET+H +E
Sbjct: 84  QWTLNPDASYVYYCENETVHEME 106


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 168 FIDFFWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTDTIVLRRVAVRCGSVLV 4
           F+  +  F+  S ++ HF  FH  + L  S    +++   +VL  VA+  G V+V
Sbjct: 353 FLVSYTTFTSVSLELLHFASFHGELVLFKSGEVPYFRGPHLVLGIVAILVGVVIV 407


>SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 381 QFWILSLKEQLQIDQDPHQLKTAL-CSCPVHLISFAQHP 268
           +F  +S+ +  ++D  PHQ  TAL  S P  LI  + HP
Sbjct: 7   EFPTISISDLTELDLQPHQTPTALENSNPSPLIPASHHP 45


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 507 NGTLIPMLHMYIFVLMKQYMVLNLTSYQIRKE 602
           N  L+P LH YI   ++ +  L+ TSY I  +
Sbjct: 43  NKVLLPALHKYIAPKIQNHYALHKTSYNIHSQ 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,263,629
Number of Sequences: 59808
Number of extensions: 459157
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)