Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20229
         (787 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ062790-1|AAY56663.1|  364|Drosophila melanogaster unknown prot...   126   3e-29
AY119560-1|AAM50214.1|  364|Drosophila melanogaster GM02605p pro...   126   3e-29
AE014297-4350|AAF56874.1|  364|Drosophila melanogaster CG11899-P...   126   3e-29
AE014296-2214|AAF49867.1|  439|Drosophila melanogaster CG14118-P...    29   7.2  
X52187-1|CAA36434.1| 1169|Drosophila melanogaster suppressor of ...    29   9.5  
AE014297-1644|AAF54918.2| 1250|Drosophila melanogaster CG8599-PA...    29   9.5  

>DQ062790-1|AAY56663.1|  364|Drosophila melanogaster unknown
           protein.
          Length = 364

 Score =  126 bits (304), Expect = 3e-29
 Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +2

Query: 503 DKWNLDPNASYVHICTNETIHGVEFDFIPDTK-GVPLIADMSSNIMSKKVDVSKFGVIYA 679
           + W LDPNASYV+ C NET+ GVEFDF+P+   GVPL+ADMSSN +S+  DVSKFGVIYA
Sbjct: 131 ETWKLDPNASYVYYCDNETVEGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYA 190

Query: 680 GAQKNIGTSGVALVIVREDLLNQALPTCP 766
           GAQKNIG +G  ++IVR+DL+ + L   P
Sbjct: 191 GAQKNIGPAGTTVIIVRDDLIGKHLKITP 219



 Score = 78.2 bits (184), Expect = 1e-14
 Identities = 43/99 (43%), Positives = 53/99 (53%)
 Frame = +3

Query: 228 SSFFNIHEANVEIQDVVRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTG 407
           S++  IH+A   I D+ R LL+VP NYK+             V LNLI +TGTADYV+TG
Sbjct: 42  SNYAKIHDAT--ISDL-RELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITG 98

Query: 408 AWSXXXXXXXXXYGKVNLVLPPTDKYEDIPDQTNGTLIP 524
           +WS         YG VN VLP   KY  +P Q    L P
Sbjct: 99  SWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDP 137



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 118 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKL 255
           V NF AGPAKLPEEV + ++  L N   SGIS++E SHRSS Y K+
Sbjct: 2   VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKI 47


>AY119560-1|AAM50214.1|  364|Drosophila melanogaster GM02605p
           protein.
          Length = 364

 Score =  126 bits (304), Expect = 3e-29
 Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +2

Query: 503 DKWNLDPNASYVHICTNETIHGVEFDFIPDTK-GVPLIADMSSNIMSKKVDVSKFGVIYA 679
           + W LDPNASYV+ C NET+ GVEFDF+P+   GVPL+ADMSSN +S+  DVSKFGVIYA
Sbjct: 131 ETWKLDPNASYVYYCDNETVEGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYA 190

Query: 680 GAQKNIGTSGVALVIVREDLLNQALPTCP 766
           GAQKNIG +G  ++IVR+DL+ + L   P
Sbjct: 191 GAQKNIGPAGTTVIIVRDDLIGKHLKITP 219



 Score = 78.2 bits (184), Expect = 1e-14
 Identities = 43/99 (43%), Positives = 53/99 (53%)
 Frame = +3

Query: 228 SSFFNIHEANVEIQDVVRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTG 407
           S++  IH+A   I D+ R LL+VP NYK+             V LNLI +TGTADYV+TG
Sbjct: 42  SNYAKIHDAT--ISDL-RELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITG 98

Query: 408 AWSXXXXXXXXXYGKVNLVLPPTDKYEDIPDQTNGTLIP 524
           +WS         YG VN VLP   KY  +P Q    L P
Sbjct: 99  SWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDP 137



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 118 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKL 255
           V NF AGPAKLPEEV + ++  L N   SGIS++E SHRSS Y K+
Sbjct: 2   VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKI 47


>AE014297-4350|AAF56874.1|  364|Drosophila melanogaster CG11899-PA
           protein.
          Length = 364

 Score =  126 bits (304), Expect = 3e-29
 Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +2

Query: 503 DKWNLDPNASYVHICTNETIHGVEFDFIPDTK-GVPLIADMSSNIMSKKVDVSKFGVIYA 679
           + W LDPNASYV+ C NET+ GVEFDF+P+   GVPL+ADMSSN +S+  DVSKFGVIYA
Sbjct: 131 ETWKLDPNASYVYYCDNETVEGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYA 190

Query: 680 GAQKNIGTSGVALVIVREDLLNQALPTCP 766
           GAQKNIG +G  ++IVR+DL+ + L   P
Sbjct: 191 GAQKNIGPAGTTVIIVRDDLIGKHLKITP 219



 Score = 78.2 bits (184), Expect = 1e-14
 Identities = 43/99 (43%), Positives = 53/99 (53%)
 Frame = +3

Query: 228 SSFFNIHEANVEIQDVVRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTG 407
           S++  IH+A   I D+ R LL+VP NYK+             V LNLI +TGTADYV+TG
Sbjct: 42  SNYAKIHDAT--ISDL-RELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITG 98

Query: 408 AWSXXXXXXXXXYGKVNLVLPPTDKYEDIPDQTNGTLIP 524
           +WS         YG VN VLP   KY  +P Q    L P
Sbjct: 99  SWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDP 137



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 118 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKL 255
           V NF AGPAKLPEEV + ++  L N   SGIS++E SHRSS Y K+
Sbjct: 2   VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKI 47


>AE014296-2214|AAF49867.1|  439|Drosophila melanogaster CG14118-PA
           protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 558 VSLVQICTYEALGSRFHLSDQVCLH 484
           V  VQ  T+E +G++ H SD VC H
Sbjct: 121 VKCVQDTTFEWMGAKIHFSDFVCNH 145


>X52187-1|CAA36434.1| 1169|Drosophila melanogaster suppressor of
           variegation protein3-7 protein.
          Length = 1169

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 342 DQDPHQLKTALCSCPVHLISFAQHPEFRH*LHV 244
           D +P Q +  LC+C + + SF +H + R   H+
Sbjct: 336 DTNPQQCRCTLCNCTMAITSFLRHCKTRAHCHM 368


>AE014297-1644|AAF54918.2| 1250|Drosophila melanogaster CG8599-PA
           protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 342 DQDPHQLKTALCSCPVHLISFAQHPEFRH*LHV 244
           D +P Q +  LC+C + + SF +H + R   H+
Sbjct: 417 DTNPQQCRCTLCNCTMAITSFLRHCKTRAHCHM 449


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,691,823
Number of Sequences: 53049
Number of extensions: 683846
Number of successful extensions: 1434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)