Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20229
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...    93   3e-19
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    30   2.2  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 39/89 (43%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
 Frame = +2

Query: 503 DKWNLDPNASYVHICTNETIHGVEFD-FIPDTKGVPLIADMSSNIMSKKVDVSKFGVIYA 679
           + W  D  A+Y++ C NET+HG+EF    P++  VPL+AD+SSN M++  D    GV++ 
Sbjct: 136 ENWVHDEKAAYLYYCANETVHGIEFTPTAPESHNVPLVADVSSNFMARPFDFKDHGVVFG 195

Query: 680 GAQKNIGTSGVALVIVREDLLNQALPTCP 766
           GAQKN+G +G+ +VIVR+DL+ +     P
Sbjct: 196 GAQKNLGAAGLTIVIVRKDLIGKQQAITP 224



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 29/83 (34%), Positives = 40/83 (48%)
 Frame = +3

Query: 261 EIQDVVRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXX 440
           E   ++R L++VPDN+++             +PLNL      ADY+VTGAWS        
Sbjct: 55  ETISLIRELMNVPDNFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAG 114

Query: 441 XYGKVNLVLPPTDKYEDIPDQTN 509
            Y  V  V  P+  Y  +PDQ N
Sbjct: 115 KYINVKKVFQPSKPYVTVPDQEN 137



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +1

Query: 124 NFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLMSK 264
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHRS  +  L+++
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNE 55


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 539 HICTNETIHGVEFDFIPDTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQ 688
           HICT+     +E D  P TKG P + D+S N +   +D  K  V+   A+
Sbjct: 605 HICTSPV--WIEIDHGPQTKGFPFLHDVSFNGI-LAIDKDKVNVLVEPAE 651


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 590 DTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNI 697
           D + +  +A+  SN  SKK    ++G +YAG  +N+
Sbjct: 566 DKREITFLAEGDSNPHSKKTQKDRYGQLYAGITENL 601


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,719,410
Number of Sequences: 27780
Number of extensions: 370961
Number of successful extensions: 896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)