Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20229
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...   110   9e-25
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...   105   3e-23
At4g11350.1 68417.m01831 fringe-related protein various hypothet...    28   8.1  
At1g51910.1 68414.m05851 protein kinase family protein contains ...    28   8.1  

>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score =  110 bits (265), Expect = 9e-25
 Identities = 52/83 (62%), Positives = 61/83 (73%)
 Frame = +2

Query: 521 PNASYVHICTNETIHGVEFDFIPDTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNIG 700
           P+A Y+HIC NETIHGVEF   P  K   L+ADMSSN  SK VDVSKFGVIY GAQKN+G
Sbjct: 209 PDAKYLHICANETIHGVEFKDYPVPKNGFLVADMSSNFCSKPVDVSKFGVIYGGAQKNVG 268

Query: 701 TSGVALVIVREDLLNQALPTCPL 769
            SGV +VI+R+DL+  A    P+
Sbjct: 269 PSGVTIVIIRKDLIGNAQDITPV 291



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +1

Query: 115 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLMSK 264
           +VFNF AGPA LPE V    + +L N+  SG+S++E SHR   ++ ++ K
Sbjct: 72  RVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQK 121



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 276 VRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKV 455
           +R LL++P  Y V             +PLNL     T D+VVTG+W          Y K 
Sbjct: 126 LRQLLEIPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKT 185

Query: 456 NLVLP-PTDKYEDIP 497
           N++    ++KY  +P
Sbjct: 186 NVIWSGKSEKYTKVP 200


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/85 (63%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
 Frame = +2

Query: 524 NASYVHICTNETIHGVEFDFIP---DTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKN 694
           +A Y+HIC NETIHGVEF   P   +  GV LIADMSSN  SK VDVSKFGVIYAGAQKN
Sbjct: 200 DAKYLHICANETIHGVEFKDYPLVENPDGV-LIADMSSNFCSKPVDVSKFGVIYAGAQKN 258

Query: 695 IGTSGVALVIVREDLLNQALPTCPL 769
           +G SGV +VI+R+DL+  A    P+
Sbjct: 259 VGPSGVTIVIIRKDLIGNARDITPV 283



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 115 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLMSK 264
           +V NF AGPA LPE V    +++L N+  SG+S++E SHR   ++ ++ K
Sbjct: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHRGKEFLSIIQK 111



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +3

Query: 276 VRNLLDVPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKV 455
           +R LL++P  Y V             +PLNL     + DY+VTG+W          Y   
Sbjct: 116 LRQLLEIPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTGSWGDKAFKEAKKYCNP 175

Query: 456 NLVLP-PTDKYEDIP 497
            ++    ++KY  +P
Sbjct: 176 KVIWSGKSEKYTKVP 190


>At4g11350.1 68417.m01831 fringe-related protein various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 489

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +1

Query: 673 ICWCSKEYWYI---WGSACHC*RGSFESGSTDMPS--LLDW 780
           IC+   + W I   WG A    RGSF     +MPS   L+W
Sbjct: 334 ICYDKHKSWTISVSWGFAVQVFRGSFSPREMEMPSRTFLNW 374


>At1g51910.1 68414.m05851 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 876

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 599 GVPLIADMSSNIMSKKVDVSKFGVI 673
           G P   D  +N++S+K DV  FGV+
Sbjct: 737 GTPGYLDPETNLLSEKTDVYSFGVV 761


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,811
Number of Sequences: 28952
Number of extensions: 331455
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)