Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20225
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    92   6e-20
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    61   2e-10
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    55   1e-08
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.5  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    27   3.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.5  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 41/67 (61%), Positives = 48/67 (71%)
 Frame = +3

Query: 54  MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 233
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 234 DEGVAKM 254
           DEGV KM
Sbjct: 61  DEGVPKM 67



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = +2

Query: 239 GCGKDAVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 373
           G  K ++GE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 63  GVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 31/66 (46%), Positives = 41/66 (62%)
 Frame = +3

Query: 57  GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 236
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 237 EGVAKM 254
            GVA M
Sbjct: 316 VGVAGM 321



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 22/43 (51%), Positives = 28/43 (65%)
 Frame = +2

Query: 245 GKDAVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 373
           G    GER K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 320 GMQEGGER-KITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/65 (46%), Positives = 37/65 (56%)
 Frame = +3

Query: 60  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 239
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 240 GVAKM 254
           G+  M
Sbjct: 318 GIVGM 322



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +2

Query: 245 GKDAVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 367
           G    GER  +      AYG +  PG IP NS L+FDV+LL
Sbjct: 321 GMQVGGERT-IHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
            pyrophosphate synthase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 301  RSARPPWSHTSQLYTYFRCRTSTSRINTICNQKLLQHHCYVNCPLKL*VTAYHIIFYHIL 480
            R+  P   + +Q+      RT+ S       +  L   CY  CPL + + A H I   + 
Sbjct: 826  RNQIPELDYLTQICFELFERTNPSGNKEFSVRITLSPGCYAQCPLDMNLDAKHCI--SVS 883

Query: 481  SLKSLYQHCDL 513
              +SL +H DL
Sbjct: 884  PRRSLTRHLDL 894


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 473 TYSH*RVYTNIVIYSGNIYIFMLSVR 550
           T ++ RVY NI I+SG IYI    +R
Sbjct: 123 TDTYVRVYGNIKIFSGKIYIASQYIR 148


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 466 FYHILSLKSLYQHCDL*WKYIYIYAIRKNFIL*VNKFM-----VRLINEILKIIDSILSD 630
           F    SLKSL   C L   +   YAI+ +F    N F+      RL+N+  +II+  L D
Sbjct: 341 FLSFNSLKSLCSKCYLRTSFPEKYAIKVDFEFLKNVFINTYDRTRLVNDYDEIINFTLKD 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,213
Number of Sequences: 5004
Number of extensions: 61239
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)