Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20225
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       69   5e-12
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   4e-09
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                39   0.003
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       33   0.17 
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             28   8.4  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
 Frame = +3

Query: 66  VETISPGDESTYPKS-GQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEG 242
           +E +S  ++ T     G T+ +HYTG L NG KFDSS DRGK F F +GK  VI+GW++G
Sbjct: 29  IEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQG 88

Query: 243 VAKM 254
           +  M
Sbjct: 89  LLDM 92



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +2

Query: 257 VGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNII 415
           +GE+ KLT  P  AYG+ G    IPP++TL  DVEL+ ++  +    N + +I
Sbjct: 94  IGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGMI 146


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +3

Query: 69  ETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDE 239
           ET  P D     K G  VVVHYTG + +G  FD++RD  K   PF+F IG   VI+G+++
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163

Query: 240 GVAKM 254
           GV  M
Sbjct: 164 GVTGM 168



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = +2

Query: 257 VGERAKLTCSPDYAYGQQGH---PGVIP-PNSTLIFDVEL 364
           VG++ K+   P  AYG++G    PG +   N+TL +++EL
Sbjct: 170 VGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +3

Query: 57   GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 212
            GV    +S G  +     G TVVV Y G   NG++FDS+   G PF+F +G+
Sbjct: 873  GVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 105 KSGQTVVVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 230
           ++G  V V YTG L      GK FDS+    K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 266 RAKLTCSPDYA----YGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNIIVMSIAL 433
           R   +CSP  A    + Q+G   ++ PNST +F + L R +  QF       +I  S+ L
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQFAFAT-SKVIETSLHL 332

Query: 434 *NSKSQLITLFFITYSH 484
               + L+   + TY+H
Sbjct: 333 RTHPTTLMLAPYYTYAH 349


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 93  STYPKSGQTVVVHYTGTLTNGKKFD 167
           + YPKSGQT  +     + NG +FD
Sbjct: 36  TAYPKSGQTWTIEIVKQVLNGGEFD 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,000,796
Number of Sequences: 59808
Number of extensions: 427760
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)