Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20223
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.72 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   5.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   6.7  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   8.9  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   8.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.9  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 449 VPKNYSKPTENNQ*SVDESNILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMN 628
           +PK  SKPT +   S + S+  RN   K  K   +  T  G    K K   P +D   ++
Sbjct: 131 IPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRG--VRKSKAGAP-SDPSSVH 187

Query: 629 THNMYETHFGESAIPSS 679
             +  E   G   +PSS
Sbjct: 188 APSSLEKPAGTGDLPSS 204


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +2

Query: 563 KFGEIQHKHKKTEPFNDELHMNTHNMYETHFGESAIPSSILQKTIVLPQHL*K 721
           KF  +  K +         H NT N++ET      + S++    + LP  L K
Sbjct: 399 KFHRVDPKRRVLLAERSAKHQNTDNLFETPDEGDGLSSAVFNFNVALPTCLVK 451


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 396 GFPFKLKCRLSRVSDEMMF--QKITQNLLKIINDLWTSQTY*GTP 524
           GFP   +C L RVS + +F    I++  L+ +  L+ +  Y  +P
Sbjct: 495 GFPHPSECSLYRVSRDTLFSYHPISEAFLQRMMSLYVASHYKNSP 539


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 151 FNKENGYEIFITDFIYLWHVYFTERTFLTQLKESKM 258
           F K + + +F+   + L   YF + T LT+ KES +
Sbjct: 40  FTKTHLHRLFVFVVLLLCSGYFLKHTLLTRPKESNV 75


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 713 GVGAILLSSVKYYWVLQIPRNGFHTCCECSCEVH 612
           G+  + ++ VKY  +L+ PR G   C    C++H
Sbjct: 360 GILELAVALVKYQTILKSPRQGI--CSRWICDLH 391


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 494 VDESNILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDEL 619
           V+E   L   +NK  ++    K K  E+  K     PF +EL
Sbjct: 872 VNELEQLEKDINKSSEDCDLQKKKLLEVSSKQGSQAPFLNEL 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,838
Number of Sequences: 5004
Number of extensions: 69604
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)