Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20223
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1019 + 21759368-21760546                                         29   4.0  
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413...    29   5.3  
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243           28   9.3  

>04_03_1019 + 21759368-21760546
          Length = 392

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 246 GKQDGIEF-ENDSQLLQDGIKLLVQPENLKKV 338
           GKQ G++   +D+  LQD +K L  PENL+KV
Sbjct: 311 GKQFGVDLSRDDAARLQDAMKKL-SPENLEKV 341


>02_01_0564 -
           4136114-4136566,4136977-4137047,4137197-4137275,
           4137380-4137535,4137867-4137938,4138081-4138161,
           4138237-4138302,4138482-4138547,4138648-4138698,
           4138982-4139109,4139239-4139377,4139606-4139643,
           4139679-4139748,4140194-4140277
          Length = 517

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 545 LTAYKTKFGEIQHKHKKTEPFNDELHMNTHNMY-ETHFGESAI 670
           L   + ++ + QH+ +  +P + + H + HNMY +TH+ ++ I
Sbjct: 429 LNQQQHQYYQSQHQQQYYQPHHFQDHQHHHNMYFQTHYQQNQI 471


>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
          Length = 523

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 608 NDELHMNTHNMYETHFGESAIPSSIL 685
           +DEL + TH      FGE  IP+S+L
Sbjct: 498 DDELRIITHKSQRYSFGERYIPTSVL 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,513
Number of Sequences: 37544
Number of extensions: 365762
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)