Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20223
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    36   0.036
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_45232| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   4.1  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     29   5.5  
SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)        28   7.2  
SB_15994| Best HMM Match : Pox_A_type_inc (HMM E-Value=2e-06)          28   7.2  
SB_58260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 458  NYSKPTENNQ*SVDESN--ILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFND 613
            N SKPT NN      +N  +  N  NKKD ELT  +    E+  K +K+  F+D
Sbjct: 3142 NNSKPTTNNNSKPTTNNKKVNLNNTNKKDSELTETQEIVQEVAPKQRKSVRFSD 3195


>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +2

Query: 464 SKPTENNQ*SVDESNILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNTHN 637
           SK  E  + + +E + LRN LN+K  EL++ + + G ++ K +  E    EL+ N  N
Sbjct: 806 SKMDERLKLTENEISNLRNMLNEKTSELSSLRLENGNLEQKMRDAEMKIHELNNNIKN 863


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 512 LRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMN 628
           L N   K+D+ L  YKT+F E+   +K  +  N++L  N
Sbjct: 7   LINMYRKQDRVLMRYKTRFSEVVDAYKNLQKENEKLQTN 45


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 288 LQDGIKLLVQPENLKKVNVFEENEKRNLSITLVMSCGFPF 407
           L+D  KL+ +P N+K  N         LS+T++   GFPF
Sbjct: 267 LEDVYKLMREPTNIKDPNAVAIIAPEALSLTILKDEGFPF 306


>SB_45232| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 381

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -1

Query: 729 TFSFYRCW---GNT-IVFCKILLGIADSPKWVSYML*VFM*SSSLNGSVFLCLC*ISPNF 562
           T S +  W   G T +V CK+ + +ADS   VS +  VFM     N  VF     +  + 
Sbjct: 93  TDSVFGVWPFSGKTGLVLCKLSMFLADSSPIVSVLSLVFMTFDRFNAVVFPFKAHLVSSN 152

Query: 561 VLYAVSSLSFLF 526
           V   + +LS+LF
Sbjct: 153 VRVCLLTLSWLF 164


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 455  KNYSKPTENNQ*SVDESNILRNTLNKKDKELTAYKT----KFGEIQHKHKKTEPFNDELH 622
            K  S+  E  +  + E   L  TL +K+ E+    T    +F EIQH+    E   D+L 
Sbjct: 1368 KTASEKMEQLRKEMQEKQELEETLRRKEDEIAELMTSTDKRFSEIQHELANIEAERDQLK 1427

Query: 623  MNTHNMYET 649
                 + E+
Sbjct: 1428 DRVKRLEES 1436


>SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)
          Length = 348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 497 DESNILRNTLNKKDKELTAYKTKFGEIQHKHK 592
           +E + L + LN K ++L  YK   GE+Q + K
Sbjct: 153 NEISDLNSKLNTKSQKLKTYKKHIGELQEREK 184


>SB_15994| Best HMM Match : Pox_A_type_inc (HMM E-Value=2e-06)
          Length = 364

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 497 DESNILRNTLNKKDKELTAYKTKFGEIQHKHK 592
           +E + L + LN K ++L  YK   GE+Q + K
Sbjct: 153 NEISDLNSKLNTKSQKLKTYKKHIGELQEREK 184


>SB_58260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 653 FGESAIPSSILQKTIVLPQH 712
           F ++ IP+SI QK + +PQH
Sbjct: 8   FAQAKIPASIAQKVVSVPQH 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,838,528
Number of Sequences: 59808
Number of extensions: 465047
Number of successful extensions: 1563
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)