Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20223
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    31   0.89 
Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    30   2.1  
Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +2

Query: 494  VDESNILRNTLNKKDKELTAYKTKFGEIQH 583
            VDE+ +L++ +++KD+E+ A K    +IQH
Sbjct: 1158 VDEATMLQDLMSRKDEEVNATKRAIEQIQH 1187


>Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 506 NILRNTLNKKDKELTAYKTKFGEI---QHKHKKTEPFNDELHMNTHNMYETHFGE 661
           ++ R  L ++ ++L   K    EI   QHK K  E   D+    T N Y+ HF +
Sbjct: 98  SVSRKCLQERIQKLEQEKAALIEIMISQHKSKYEEKLKDKKEKRTSNYYKKHFNK 152


>AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 506 NILRNTLNKKDKELTAYKTKFGEI---QHKHKKTEPFNDELHMNTHNMYETHFGE 661
           ++ R  L ++ ++L   K    EI   QHK K  E   D+    T N Y+ HF +
Sbjct: 98  SVSRKCLQERIQKLEQEKAALIEIMISQHKSKYEEKLKDKKEKRTSNYYKKHFNK 152


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 422 TFQSIR*NDVPKNYSKPTENNQ*SVDESNILRNTLNK 532
           T Q I+ N+ P+N+ K +  N   V ESN L   L K
Sbjct: 159 TVQEIKNNETPRNFFKTSIINNLEVSESNFLNFELEK 195


>Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical
           protein T11A5.7 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 293 LQQLRIIFEFYSILLSFSCVRKVLSVK*TCHK*IKSVMKI 174
           LQ+L   F  Y I+  F   RK+ SV    H  ++S MK+
Sbjct: 272 LQELNCAFPSYGIITVFLVSRKIFSVHNQIHSSLESQMKL 311


>Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical
           protein ZK507.4 protein.
          Length = 206

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -2

Query: 644 HTCCECSCEVHH*MVQFFCVCVEFHQTLFYMQSALYLSCSRCSLICLTRPQIIDYFQ*VL 465
           H   +C CE  +  +Q +C      +   Y     Y+SCS  + I    P++ D F    
Sbjct: 141 HCTRQCKCEYEYHRMQKWCKPPRIEERFKYFCRIWYMSCS--TYIEELDPEMADAFVSQY 198

Query: 464 SNFLEHH 444
           +N+  +H
Sbjct: 199 ANYGNYH 205


>Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical
           protein F10D11.4 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 446 DVPKNYSKPTENNQ*SVDESNILRNTLNKKDKELTAYKTKFGEIQHKHKKT 598
           +V +   KP   +Q S+DESN     L   DK +   K     I HK KK+
Sbjct: 28  NVQETPPKPAAPSQMSIDESNSKNKKLPSADKSVEEIKK---PISHKKKKS 75


>Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 646 FIHVVSVHVKFIIEWFSFFVFVLNFTKLCF 557
           F H      +F++ WF   V  LN   LC+
Sbjct: 70  FAHAWRSGTRFVLVWFGILVHALNVENLCY 99


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 234 HATKGKQD-GIEFENDSQLLQDGIKLLVQPENLKKVNVFEENEKRNLSITLVMSCGFPFK 410
           H  K   D G+E E+DS   +D  K    P+    +N+  E   +NL     ++  F   
Sbjct: 409 HKPKSATDYGVESESDSDFERDKSKQKNFPKWASDMNIVNEEYAKNLEFN--VNTFFGSM 466

Query: 411 LKCRLSRVSDEMMFQK 458
            K  L+ +  EM+ +K
Sbjct: 467 EKANLTEIFGEMVRKK 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,204
Number of Sequences: 27780
Number of extensions: 388878
Number of successful extensions: 1172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)