Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20223
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident...    30   1.5  
At2g25510.1 68415.m03054 expressed protein                             29   2.6  
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    29   3.4  
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to...    29   4.5  
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to...    29   4.5  
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    29   4.5  
At4g22190.1 68417.m03208 expressed protein                             28   5.9  
At1g44750.2 68414.m05127 purine permease family protein similar ...    28   7.8  
At1g44750.1 68414.m05126 purine permease family protein similar ...    28   7.8  
At1g12270.1 68414.m01419 stress-inducible protein, putative simi...    28   7.8  

>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) identical
            to COP1-Interacting Protein 7 (CIP7) GI:3327868 from
            [Arabidopsis thaliana]
          Length = 1058

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 482  NQ*SVDESNILRNTLNKKDKELTA--YKTKFGEIQHKHKKTEPFNDELHMNTHNMYETHF 655
            +Q  +D+   ++NT   +DK++T   Y    GE+Q   +K       +  +  NM E ++
Sbjct: 950  DQTKIDDQETVKNTSVSEDKQITTKHYSEDVGEVQASQEKPVSPKKSVTFSETNMEEKYY 1009

Query: 656  GESAI 670
               A+
Sbjct: 1010 FSPAV 1014


>At2g25510.1 68415.m03054 expressed protein
          Length = 103

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 668 LQIPRNGFHTCCECSCEVHH*MVQFFCVCVEFHQ-TLFYMQS 546
           L I  N     C C+C +H  +V  FC+C+  H   +FY  S
Sbjct: 56  LVIDLNLASNACVCACFLHCGLVCGFCLCLPMHVFVIFYSLS 97


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +2

Query: 443 NDVPKNYSKPTENNQ*SVDESNILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDEL 619
           +D PK  S P  N    V++  +  +    ++K ++A++  FG ++H  K+ E ++  L
Sbjct: 103 SDPPKQPSGPLTNYSKLVEQGRLQHDPY--QEKVVSAFENLFGRLEHFEKQMEDYHVRL 159


>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 305

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -3

Query: 589 VFVLNFTKLCFICSQLFIFLVQGVP*YV*LVHRSLIIFSRF*VIFWNIIS------SDTL 428
           VFV  F+ +  + + LF FL+   P Y+  +  S++  +   V  W   +      S TL
Sbjct: 220 VFVSTFSPVSLVAATLFDFLILHSPLYLGSILGSVVTITGLYVFLWGRKNETDQSVSKTL 279

Query: 427 ESLHFNLNGNPQDIT 383
            S  F+ N + +D T
Sbjct: 280 NSSQFSQNKDNEDHT 294


>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -3

Query: 589 VFVLNFTKLCFICSQLFIFLVQGVP*YV*LVHRSLIIFSRF*VIFWNIIS------SDTL 428
           VFV  F+ +  + + LF FL+   P Y+  +  S++  +   V  W   +      S TL
Sbjct: 280 VFVSTFSPVSLVAATLFDFLILHSPLYLGSILGSVVTITGLYVFLWGRKNETDQSVSKTL 339

Query: 427 ESLHFNLNGNPQDIT 383
            S  F+ N + +D T
Sbjct: 340 NSSQFSQNKDNEDHT 354


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 204 ACLFH*KNFSHATKGKQDGIEFENDSQLLQDGIKLLVQPEN 326
           A  F  K + +A +  Q G+E + ++Q L DG+K  VQ  N
Sbjct: 458 AVQFFMKEYDNAMETYQKGLEHDPNNQELLDGVKRCVQQIN 498


>At4g22190.1 68417.m03208 expressed protein
          Length = 387

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 318 PENLKKVNVFEENEKRNLSITLVMSCGFPFKLKCRLSRVS 437
           PE  K   V E N+ + L++ + M  G+  +L CR    S
Sbjct: 309 PETRKGKTVIESNKAKVLNLNVPMCIGYRSRLSCRTEESS 348


>At1g44750.2 68414.m05127 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 367

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 686 VKYYWVLQIPRNGFHTCCECSCEVHH*MVQFFCVCVEFH-QTLFYMQSALYLSCSRCSLI 510
           + Y  +L +P +      E SC + + ++ +  + V      + Y    LYLS S  SLI
Sbjct: 76  ILYIPLLLLPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLYSVGLLYLSASTYSLI 135

Query: 509 CLTR 498
           C T+
Sbjct: 136 CATQ 139


>At1g44750.1 68414.m05126 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 379

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 686 VKYYWVLQIPRNGFHTCCECSCEVHH*MVQFFCVCVEFH-QTLFYMQSALYLSCSRCSLI 510
           + Y  +L +P +      E SC + + ++ +  + V      + Y    LYLS S  SLI
Sbjct: 88  ILYIPLLLLPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLYSVGLLYLSASTYSLI 147

Query: 509 CLTR 498
           C T+
Sbjct: 148 CATQ 151


>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 572

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 204 ACLFH*KNFSHATKGKQDGIEFENDSQLLQDGIKLLVQPEN 326
           A  F  K + +A +  Q G+E +  +Q L DG+K  VQ  N
Sbjct: 459 AVQFFLKEYDNAMETYQAGLEHDPSNQELLDGVKRCVQQIN 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,850
Number of Sequences: 28952
Number of extensions: 335727
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)