Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20222
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.47 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   1.4  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   1.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.9  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   3.3  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   3.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.4  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   4.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.6  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 365 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 460
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 435 PRNTQSCSLRLPQPKANREKMTQIISKHSTRPPCTS 542
           P +TQS S  +    A     T I + HSTR   TS
Sbjct: 260 PASTQSLSRWIKMVLAESGVDTSIYTAHSTRHAATS 295


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 238 GTRREEHHLLRNRP 197
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 465 LPQPKANREKMTQIISKHSTRPPCTSP 545
           +P PK +   + + +S   T PP  SP
Sbjct: 77  IPSPKRSSPILAEKVSVSPTTPPTPSP 103


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 238 GTRREEHHLLRNRP 197
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 238 GTRREEHHLLRNRP 197
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 129 KLVRCRCDKMKIKRPAVTANREKQIP 52
           K  R   D+ ++ RPA  ANR    P
Sbjct: 330 KRPRPNIDRHEVTRPAAPANRGNGFP 355


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 484 TERR*PRSFRNIQHAR 531
           + R+ P+SF +IQH R
Sbjct: 83  SRRKAPQSFEDIQHQR 98


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 403 MPNLLHVIPVSDDSVFD 353
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 403 MPNLLHVIPVSDDSVFD 353
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 403 MPNLLHVIPVSDDSVFD 353
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 403 MPNLLHVIPVSDDSVFD 353
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 233 CSPRSWEAPPSGR 271
           C  R W +PP  R
Sbjct: 120 CPRREWSSPPDAR 132


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 233 CSPRSWEAPPSGR 271
           C  R W +PP  R
Sbjct: 276 CPRREWSSPPDAR 288


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,405
Number of Sequences: 336
Number of extensions: 3672
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)