Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20222
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 130 1e-31
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 82 5e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 78 8e-16
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 4e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 52 5e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 41 2e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.030
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 31 0.16
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 29 0.65
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 1.5
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 27 2.0
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 3.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.6
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 6.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 6.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 130 bits (314), Expect = 1e-31
Identities = 62/78 (79%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAP RE FETFN
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNA 129
Query: 527 PAMYVAIQAVLSLYASGR 580
PA YVAIQAVLSLYASGR
Sbjct: 130 PAFYVAIQAVLSLYASGR 147
Score = 77.8 bits (183), Expect = 1e-15
Identities = 48/97 (49%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYPSNTESSLTGMTWRRFGIIPSTM--- 419
G+PRH G+MVGMGQKDSYVGDEAQS RGILTLKYP E + I T
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYP--IEHGIVNNWDDMEKIWHHTFYNE 93
Query: 420 SCVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRP 530
V+P + + PK+NREKMTQII + P
Sbjct: 94 LRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAP 130
Score = 76.6 bits (180), Expect = 2e-15
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +1
Query: 148 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 82.2 bits (194), Expect = 5e-17
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Frame = +2
Query: 344 QIPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPSTQGQQREDDPDHF-ET 517
Q PIE GI+ NW DME+IW + + + +L PEEHP+LLTE P + +E ++F ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 518 FNTPAMYVAIQAVLSLYASGR 580
N PA+ ++Q VL+LYAS R
Sbjct: 132 LNVPALSFSLQPVLALYASAR 152
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 166 LVVDNGSGMCKAGFAGDDAPRAVFPSIVG 252
+ +DNGSG KAGFAGDD P+ +FP+ VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVG 40
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP 353
G+ +H+ VM QKD +VG EAQ+ RG+L ++ P
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRP 74
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 78.2 bits (184), Expect = 8e-16
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PI HG + NWD ME+ W + + LR PE+H LLTE P + RE+ + FE+FN
Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNC 152
Query: 527 PAMYVAIQAVLSLYAS 574
+Y+A+QAVL+L AS
Sbjct: 153 AGLYIAVQAVLALAAS 168
Score = 41.1 bits (92), Expect = 1e-04
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +1
Query: 166 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGS 255
+++DNG+G K G+AG+DAP VFP+++ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT 37
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 69.3 bits (162), Expect = 4e-13
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
P+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P RE + FE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 527 PAMYVAIQAVLSLYASG 577
+YVAIQAVLSLYA G
Sbjct: 130 GGVYVAIQAVLSLYAQG 146
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +1
Query: 154 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSPAIRA 270
E A +V+DNG+G K G+A D+ PR FPSIVG P +RA
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
Score = 30.7 bits (66), Expect = 0.16
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 291 KDSYVGDEAQSTRGILTLKYP 353
KD VGDEA++ R +L +KYP
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYP 70
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.4 bits (120), Expect = 5e-08
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 353 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNTP 529
I +G V NWD +W + +L+ P EHP+L+TE + R + FE+ P
Sbjct: 69 IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCP 128
Query: 530 AMYVAIQAVLSLYASGR 580
A Y+A Q + +ASG+
Sbjct: 129 ATYLAKQETCAAFASGK 145
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 151 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 252
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.0 bits (104), Expect = 4e-06
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
P E +++NWD ME++ +TF +L + EHP+ +TE + R + FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 527 PAMYVAIQAVLSLY 568
P++ I + S Y
Sbjct: 145 PSVAYGIDGLFSFY 158
Score = 33.1 bits (72), Expect = 0.030
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 166 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 249
LV+DNGS +AG+ G+ P+ VF ++V
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLV 54
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 359 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP-STQGQQREDDPDHFETFNTPAM 535
+GI+ +W+ W +L+V P E+ +++TE + Q +++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 536 YVAIQAVLSLYASGR 580
Y+ QAV +A+ +
Sbjct: 134 YLTKQAVCVAFANSK 148
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 151 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 252
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 33.1 bits (72), Expect = 0.030
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +2
Query: 335 PDPQIPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPSTQGQQRE-DD 499
P+ PI+ G V +W+ ++ W H Y+ L P + +PV L RE
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 500 PDHFETFNTPAMYVAIQAVLSLYASG 577
FE P +A + ++ LYA G
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIG 192
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.7 bits (66), Expect = 0.16
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = -3
Query: 291 SVPYRPSRPDGGASHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFVAHLELVKLVRCR 112
SVPY PS+P+GGA G H R +++ L T N V + +L+ R
Sbjct: 87 SVPY-PSKPNGGAYQGIGFHYGRFVMNLRKALTST--------PNVTVTEATVNELL--R 135
Query: 111 CDKMKIKRPAVTANREKQIPIAGRCPCSTQC 19
+ ++ VT++++ + P+ + P + C
Sbjct: 136 DETGEVITGVVTSSKKSESPVEYKAPLTIVC 166
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 28.7 bits (61), Expect = 0.65
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 327 RGILTLKYPSNTESSLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPQPKANREKMTQI 506
RG L LK PS E L + F +P + C++P S + P P + +
Sbjct: 863 RGFLNLK-PSELERELFSRSPDLFNCLPRLLCCIAPILQLLSALILAPWPSETPSLLAYM 921
Query: 507 IS 512
I+
Sbjct: 922 IN 923
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 318 VPHLLHKSPSVPYRPSRPDGGAS 250
+ L+ K+PS PY SRP AS
Sbjct: 306 IDQLISKAPSYPYSSSRPSASAS 328
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 467 PSTQGQQREDDPDHFETFNTPAMYVAIQAVL 559
P+++G PD+ E F+ PA+YV ++ L
Sbjct: 32 PTSRGTVPHLTPDNVEEFDIPALYVGLEDCL 62
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 317 TEHKRYPDPQIPIEHGIVTNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPSTQGQQRE 493
T K YPD IP++ I E++ FY E+R + +E + P + Q+ E
Sbjct: 27 TPTKLYPDRDIPLQRSI-----RPEELLELRFYKEIRTSFLDESAFYIRRNPISVVQRNE 81
Query: 494 DDPDHFETFNTP 529
D + N P
Sbjct: 82 DGLVRYSDRNKP 93
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 329 SCALCLISYIRVLLSHTDHHAL 264
SC L + SY ++L+H+D + L
Sbjct: 8 SCVLAVSSYAEIILAHSDENLL 29
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 193 TYRSHCLLPTRQLLRRTS*ISEI 125
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 347 FEGQDTSCALCLISYIRVLLSHTDHHA 267
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 474 PKANREKMTQIISKHSTRPPCTSPS 548
PK+N +M+ +IS R P T+PS
Sbjct: 148 PKSNHIRMSTLISFTCNRDPYTAPS 172
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 261 GGASHDRGEHGARSIISCETGLAHTGAIV 175
GGASH E + +CE LA+ I+
Sbjct: 421 GGASHAEEEEEGEDLCNCEFSLAYGAKIL 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,078
Number of Sequences: 5004
Number of extensions: 61646
Number of successful extensions: 192
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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