Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20222
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 9e-33
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 9e-33
SB_56| Best HMM Match : Actin (HMM E-Value=0) 136 9e-33
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 136 9e-33
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 9e-33
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_54| Best HMM Match : Actin (HMM E-Value=0) 70 1e-12
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 60 1e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 51 6e-07
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 50 1e-06
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 7e-06
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 47 1e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 43 2e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.52
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 31 0.52
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 31 0.91
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18) 30 1.2
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6) 30 1.6
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 2.8
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 29 2.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9) 28 6.4
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_3898| Best HMM Match : CITED (HMM E-Value=1.5) 28 6.4
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 27 8.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_14892| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44) 27 8.5
SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28) 27 8.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 136 bits (330), Expect = 9e-33
Identities = 65/78 (83%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP RE FETFN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 130
Query: 527 PAMYVAIQAVLSLYASGR 580
PAMYVAIQAVLSLYASGR
Sbjct: 131 PAMYVAIQAVLSLYASGR 148
Score = 80.6 bits (190), Expect = 9e-16
Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP--SNTESSLTGMTWRRFGIIPSTMS 422
G+PRHQGVMVGMGQKDSYVGDEAQS RGILTLKYP ++ M + +
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 423 CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRP 530
V+P + + PKANREKMTQI+ + P
Sbjct: 97 -VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 131
Score = 77.8 bits (183), Expect = 6e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +1
Query: 142 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 136 bits (330), Expect = 9e-33
Identities = 65/78 (83%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP RE FETFN+
Sbjct: 70 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 129
Query: 527 PAMYVAIQAVLSLYASGR 580
PAMYVAIQAVLSLYASGR
Sbjct: 130 PAMYVAIQAVLSLYASGR 147
Score = 80.6 bits (190), Expect = 9e-16
Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP--SNTESSLTGMTWRRFGIIPSTMS 422
G+PRHQGVMVGMGQKDSYVGDEAQS RGILTLKYP ++ M + +
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 95
Query: 423 CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRP 530
V+P + + PKANREKMTQI+ + P
Sbjct: 96 -VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 130
Score = 74.9 bits (176), Expect = 4e-14
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +1
Query: 148 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 136 bits (330), Expect = 9e-33
Identities = 65/78 (83%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP RE FETFN+
Sbjct: 70 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 129
Query: 527 PAMYVAIQAVLSLYASGR 580
PAMYVAIQAVLSLYASGR
Sbjct: 130 PAMYVAIQAVLSLYASGR 147
Score = 80.6 bits (190), Expect = 9e-16
Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP--SNTESSLTGMTWRRFGIIPSTMS 422
G+PRHQGVMVGMGQKDSYVGDEAQS RGILTLKYP ++ M + +
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 95
Query: 423 CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRP 530
V+P + + PKANREKMTQI+ + P
Sbjct: 96 -VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 130
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 148 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 136 bits (330), Expect = 9e-33
Identities = 65/78 (83%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP RE FETFN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 130
Query: 527 PAMYVAIQAVLSLYASGR 580
PAMYVAIQAVLSLYASGR
Sbjct: 131 PAMYVAIQAVLSLYASGR 148
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = +1
Query: 142 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
Score = 80.6 bits (190), Expect = 9e-16
Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP--SNTESSLTGMTWRRFGIIPSTMS 422
G+PRHQGVMVGMGQKDSYVGDEAQS RGILTLKYP ++ M + +
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 423 CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRP 530
V+P + + PKANREKMTQI+ + P
Sbjct: 97 -VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 131
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 136 bits (330), Expect = 9e-33
Identities = 65/78 (83%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP RE FETFN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 130
Query: 527 PAMYVAIQAVLSLYASGR 580
PAMYVAIQAVLSLYASGR
Sbjct: 131 PAMYVAIQAVLSLYASGR 148
Score = 80.6 bits (190), Expect = 9e-16
Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP--SNTESSLTGMTWRRFGIIPSTMS 422
G+PRHQGVMVGMGQKDSYVGDEAQS RGILTLKYP ++ M + +
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 423 CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRP 530
V+P + + PKANREKMTQI+ + P
Sbjct: 97 -VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 131
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = +1
Query: 142 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +1
Query: 148 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVG P
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
Score = 74.9 bits (176), Expect = 4e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 249 GKPRHQGVMVGMGQKDSYVGDEAQSTRGILTLKYP 353
G+PRHQGVMVGMGQKDSYVGDEAQS RGILTLKYP
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 70
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +2
Query: 509 FETFNTPAMYVAIQAVLSLYASGR 580
FETFN+PAMYVAIQAVLSLYASGR
Sbjct: 87 FETFNSPAMYVAIQAVLSLYASGR 110
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/77 (35%), Positives = 35/77 (45%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPDHFETFNTP 529
PIEHGIVTNWDDMEKI TF + + + L + T G + T
Sbjct: 70 PIEHGIVTNWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIY 129
Query: 530 AMYVAIQAVLSLYASGR 580
Y A++ L +GR
Sbjct: 130 EGYALPHAIIRLDLAGR 146
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +2
Query: 392 KIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNTPAMYVAIQAVLSLY 568
K+W H F ++LRV E+ PVLLTEAP RE FE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 569 ASGR 580
ASGR
Sbjct: 2189 ASGR 2192
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 166 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
+V+DNGSG CKAG + D++PR VFP+IVG P
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRP 2127
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFN 523
P+++GIV NWDDM+ +W +TF +++ + P VLLTE P + RE + FE +
Sbjct: 73 PMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMFENYQ 132
Query: 524 TPAMYVAIQAVLSLYASG 577
+Y+AIQAVL+LYA G
Sbjct: 133 FEGVYIAIQAVLTLYAQG 150
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 160 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSPAIRA*WSVWD 288
+ +V DNG+G K G+AG + P +FPS+VG P IR+ V D
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD 49
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 291 KDSYVGDEAQSTRGILTLKYPSNTESSLTGMTWRRFGIIPSTMSCVS-PPRNTQSCSLRL 467
KD VGDEA R +L + YP + + S ++ PRNT+
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 468 P-QPKANREKMTQII 509
P P NREKM +++
Sbjct: 113 PLNPMKNREKMIEVM 127
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/48 (58%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = +2
Query: 440 EHPVLLTEAPSTQGQQREDDPD-HFETFNTPAMYVAIQAVLSLYASGR 580
+HPVLLTEAP + RE + FETFN PA+++++QAVLSLYA+GR
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGR 173
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPD-HFETFNT 526
PI+ G++ +WD EKI + + ++ HP+L++EA +RE + FE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 527 PAMYVAIQAVLSLYASGR 580
PA ++ +VL+ +A+GR
Sbjct: 63 PAFFLCKNSVLTAFANGR 80
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1
Query: 151 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
E LV+D GS M K GFAGDDAP+ VFP IVG P
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 136 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSP 258
FK+ A+V+DNG G+ K GFAGD PR + P++VG+P
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNP 733
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 509 FETFNTPAMYVAIQAVLSLYASGR 580
FE FN+PA+YVAIQAVLSLYASGR
Sbjct: 3 FEAFNSPAVYVAIQAVLSLYASGR 26
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 350 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 457
PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 301 PIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = -3
Query: 255 ASHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 148
++ D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 4 SADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 135 LVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQC 19
L++L C C+K + KR + + Q+P C C C
Sbjct: 620 LLELTTCSCEKSRCKRDDLCPCKSNQMPCTEACQCMNTC 658
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 147 AHLELVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQ 22
A L L+KL CRC K +R + + + IP C C+++
Sbjct: 1296 APLSLLKLTTCRCVKTACRRDDLCSCKANDIPCTEACLCTSE 1337
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 239 GNTARGASSPAKPALHIPEPLSTT 168
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 239 GNTARGASSPAKPALHIPEPLSTT 168
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 233 CSPRSWEAPPSGRDGRYGTEGLLCRR*GTE----HKRYPDPQIPIE 358
C+PR W P R+GR T L CR E +R P P+ +E
Sbjct: 274 CAPRQWLEPTEKREGREVTNKLRCRDMNCEICASAERRPKPKYDVE 319
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 347 IPIEHGIVTNWDDMEKIWHHTFYNE 421
+P + G + NWD ++IW +TF E
Sbjct: 291 LPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 154 EVAALVVDNGSGMCKAGFAGDDAPRAV 234
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 239 GNTARGASSPAKPALHIPEPLSTT 168
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18)
Length = 125
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Frame = +3
Query: 408 PSTMS-CVSPPRNTQSCSL------RLPQPKANREKMTQIISKHS--TRPP-----CTSP 545
P+ MS C PP C+ R QP + TQ +K S T+ P CT P
Sbjct: 8 PNEMSRCTQPPHEMSRCTQQTYEMSRCTQPPHEMSRCTQQPNKMSRCTQQPNEMSRCTQP 67
Query: 546 SKPCSRCTRP 575
SRCT+P
Sbjct: 68 PHEMSRCTQP 77
>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
Length = 383
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 318 QSTRGILTLKYPSNTESSLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPQ-PKANR-E 491
Q G+ T+++P + + + M + R+ T++ V P R CSLR Q P ++
Sbjct: 72 QVNHGLRTVRHPHSHTGTKSTMVYARY----DTLTRV-PSR---PCSLRTAQHPHSHTGT 123
Query: 492 KMTQIISKHSTRPPCTSPSKPCS 560
K T + +++ T PS+PCS
Sbjct: 124 KSTMVYARNDTLTSTRVPSQPCS 146
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 405 IPSTMSCVSPPRNTQSCSLRLPQPKANREK-----MTQIISKHSTRPPCTSPSKP 554
IPS ++ P +TQ+ Q NR + ++ +I+ H+ PP T+PS P
Sbjct: 252 IPSPVTVQEAPPSTQT-ETETQQASTNRNRTEIPPLSSLIATHNHSPPNTAPSPP 305
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +3
Query: 405 IPSTMSCVSPPRNT--QSCSLRLPQPKAN----REKMTQIISKHSTRP-PCTSPSK 551
+ S C+SPP+NT Q C +L PK + + + Q P PC +P K
Sbjct: 873 LESPKQCISPPKNTLKQVCPSQLESPKQSDLSPKNTLKQAGPSQLESPEPCVTPPK 928
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 405 IPSTMSCVSPPRNT--QSCSLRLPQPKANREKMTQIIS--KHSTRPPCTSPSKPCSRCTR 572
+ S C+SPP+NT Q C +L PK Q IS K++ + C S + +C
Sbjct: 807 LESPKQCISPPKNTLKQVCPSQLESPK-------QCISPPKNTLKQVCPSQLESPKQCIS 859
Query: 573 PV 578
P+
Sbjct: 860 PL 861
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 239 GNTARGASSPAKPALHIPEPLSTT 168
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 239 GNTARGASSPAKPALHIPEPLSTT 168
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)
Length = 319
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 284 HTDHHALMAGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 141
H HH + LPT T SP K H P T+A T+++HI
Sbjct: 247 HCPHHPVQT-LPT-SARTNTAHISPCKHCPHQPVQTLPTSARTNTAHI 292
>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 474 PKANREKMTQIISKHSTRP-PCTSPSKPCSRCTRPVV 581
P + + T++I++H + PCTSPS+ TR V+
Sbjct: 438 PCTSPSRTTRVITRHPVKYYPCTSPSRTTRVITRNVL 474
>SB_3898| Best HMM Match : CITED (HMM E-Value=1.5)
Length = 1166
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 281 TDHHALMAGLPTIEGNTARGASSPA--KPALH-IPEPLS 174
+DH AL AGL +E A G SSP+ AL IP PL+
Sbjct: 497 SDHTALKAGLSALEVAAAPGKSSPSFFPIALSPIPTPLA 535
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 408 PSTMSCVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRPPCTSPSKPCSRCTRP 575
PS +P RN+ S S R P P +N + +S + + P TSP + S T P
Sbjct: 595 PSPNLISNPNRNSNSNSNRNPNPSSN---PSPSLSPNPSPNPSTSPYRNHSSNTNP 647
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 315 PHLLHKSPSVPYRPSRPDGGASHDRGEHGARSIISCETGLAHTGAIV 175
P S SVP DG ++++G +GA I TG+ HT ++
Sbjct: 2354 PFAFGASSSVPEESMEADGNNNNNQG-NGAAPPILAPTGIIHTNTML 2399
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 254 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 144
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_14892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 279 GMGQKDSYVGDEAQSTRGILTLKYPSNTESSLTGMTWRRFGII 407
G+GQ D E + GI +L+ PS+ ++ G ++RR G++
Sbjct: 166 GLGQADKLTVQELLNAAGIDSLEQPSDALNA-KGKSFRRHGMV 207
>SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44)
Length = 75
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +3
Query: 408 PSTMS-CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRPP----CTSPSKPCSRCTR 572
P+ MS C PP C+ + P + + +S+ + +P CT P SRCT+
Sbjct: 8 PNEMSRCTQPPHEMSRCTQQ-PHEMSRCTQQPHEMSRCTQQPHEMSRCTQPQHEMSRCTQ 66
>SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)
Length = 115
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 408 PSTMS-CVSPPRNTQSCSLRLPQPKANREKMTQIISKHSTRPPCTSPSKPCSRCTRP 575
P MS C PP C+ QP + TQ ++ S CT SRCT+P
Sbjct: 18 PHEMSRCTQPPHEMSRCT----QPPHEMSRCTQQPNEMSR---CTQQPHEMSRCTQP 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,082,308
Number of Sequences: 59808
Number of extensions: 545076
Number of successful extensions: 1700
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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