Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20222
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.41 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 288 VPY-RPSRPDGGASHDRGEHGARSIISCETGLAHTGAIVYYQRGNF 154
           VPY R  RPD    ++     + ++I+    ++HTG +V+   G F
Sbjct: 82  VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIF 127


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 385 VIPVSDDSVFDGYLRVRIPLV 323
           V PV ++  +D +  +RIP+V
Sbjct: 168 VDPVEENETYDEFDTIRIPIV 188


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 450 SCSLRLPQPKANREKMTQIISK 515
           S  ++LP+  ANR K+ +I  K
Sbjct: 281 SVHIKLPKLAANRAKLEEIAGK 302



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 96  IKRPAVTANREKQIPIAGR 40
           IK P + ANR K   IAG+
Sbjct: 284 IKLPKLAANRAKLEEIAGK 302


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 294 PSVPYRPSRPDGGASHDRGEHGARSIISCETGLA 193
           P+      +P+   + D GEH   ++   E GLA
Sbjct: 109 PTKSILEKKPELVDATDPGEHNGDTVTDVEAGLA 142


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 187 GMCKAGFAGD 216
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 246 DRGEHGARSIISCETGLA 193
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,243
Number of Sequences: 438
Number of extensions: 4397
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)