Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20219
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 87 1e-17
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 85 7e-17
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 58 7e-09
08_01_0688 - 6072815-6073918 29 3.9
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 5.1
10_01_0133 + 1621574-1625779 29 5.1
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 5.1
01_06_1021 - 33883594-33884583 29 5.1
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 5.1
01_06_0324 - 28485196-28486098 29 5.1
08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226 28 6.8
08_01_0310 + 2714773-2715309,2716426-2716650 28 6.8
06_01_1059 + 8512335-8513444 28 6.8
05_03_0623 - 16307969-16308323,16308428-16308482,16309413-163095... 28 6.8
03_02_1028 - 13444284-13445381 28 6.8
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 6.8
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 87.4 bits (207), Expect = 1e-17
Identities = 46/86 (53%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 EDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL-HSRGLNHEYAPISGEATYTDAVAK 430
+D P KVNLGVGAYR +EGKP VL VR+AE++L ++ EY PI+G A + AK
Sbjct: 27 KDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAK 86
Query: 431 LAFGEDSPVIKNKSNCTVQTLSGTGA 508
L FG DSP I+ TVQ LSGTG+
Sbjct: 87 LIFGADSPAIQENRVATVQCLSGTGS 112
Score = 77.8 bits (183), Expect = 8e-15
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 RLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDI 690
R+G EF+ +HY + + I++P PTWGNHP++ L + YRY+DP T G D QG LED+
Sbjct: 114 RVGGEFLARHYHE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDL 172
Query: 691 SKFPKVPYSVARV-AHNP 741
P + AHNP
Sbjct: 173 GSAPSGAIVLLHACAHNP 190
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 84.6 bits (200), Expect = 7e-17
Identities = 44/87 (50%), Positives = 54/87 (62%)
Frame = +2
Query: 257 DTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGLNHEYAPISGEATYTDAVAKLA 436
D P KVN+GVGAYRDD GKP VL VR+AE + + +N EY P+ G + KLA
Sbjct: 54 DPSPDKVNVGVGAYRDDSGKPVVLECVREAERRI-AGSMNMEYLPMGGSIKMIEESLKLA 112
Query: 437 FGEDSPVIKNKSNCTVQTLSGTGASAL 517
+GE+ IK+K VQ LSGTGA L
Sbjct: 113 YGENCEFIKDKRIAAVQALSGTGACRL 139
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 RLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDI 690
RL +F K + +I++PTPTW NH I +P K + Y+ P++ G D G ++DI
Sbjct: 138 RLFADF-QKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDI 196
Query: 691 SKFPKVPYSVARV-AHNP 741
P + + AHNP
Sbjct: 197 KNAPDGSFFLLHACAHNP 214
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 156 IVGCTGLRASSTWWNNVQMGPPDVILGITEAY 251
++G R+ ++W+ +V+ D ILG+TEA+
Sbjct: 20 LMGAVAARSMASWFGHVEPAAKDPILGVTEAF 51
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 RLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDI 690
RL +F + + +I++PTPTW NH I +P + + Y+ P++ G D G ++DI
Sbjct: 75 RLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDI 133
Query: 691 SKFPKVPYSVARV-AHNP 741
P + + AHNP
Sbjct: 134 KNAPNGSFFLLHACAHNP 151
>08_01_0688 - 6072815-6073918
Length = 367
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 183 SSTWWNNVQMGPPDVILGITEAYKRTHI 266
+S WW++ +M + TEA+K+THI
Sbjct: 109 ASEWWDHFRMNRAEGHPKFTEAFKKTHI 136
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 582 GKPPANLQHPQLAAQEIPLLRSQDQWFRFAGS 677
G PP + +L +E PL+RS+ WFRFA S
Sbjct: 1765 GCPPIIKEEMKLN-EEPPLIRSKYGWFRFAAS 1795
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 146 CRHDRWLYRP*SQQHLVEQCSDGSARCNLRHYRSIQEDTHPKKVNLGV 289
C + R+ Y P S +HL + S S L HY++ +E+ K + V
Sbjct: 563 CSNPRFAYTPPSIRHLSIRTSCTSDTVGLDHYQNFKEEIRNLKEQISV 610
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -3
Query: 680 SAPCKSKPLVLGSK*RYFLCGKLRVLQICGWFPQVGVGSQISF 552
+A +++PL++G G+ RVL+ GW P G+G+ +++
Sbjct: 789 TALIENRPLLIGED---LTEGEARVLEEYGWVPNSGLGTMLNY 828
>01_06_1021 - 33883594-33884583
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 474 LLLFLMTGLSSPKASLATASVYVASP--LMGAYS*LSPLLWRISSAFL 337
+LLF ++ LS+ A AS+Y A P + + + L P+L R+ FL
Sbjct: 87 ILLFTLSLLSTAAAVFTVASLYAAKPASIASSLAALPPILPRLLRTFL 134
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 583 GNHPQICNTLNLPHKKYRYFDPK 651
GN Q C T +P KY+ DPK
Sbjct: 186 GNWSQFCKTFEVPVVKYQQMDPK 208
>01_06_0324 - 28485196-28486098
Length = 300
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 583 GNHPQICNTLNLPHKKYRYFDPK 651
GN Q C T +P KY+ DPK
Sbjct: 189 GNWSQFCKTFEVPVVKYQQMDPK 211
>08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226
Length = 298
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 242 RSIQEDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGLNHEY 385
R +++D H K +N+ Y+DD PF+L + K L L +E+
Sbjct: 146 RGVRDDGHFKSINIQSFWYKDD---PFILATQSKKIFYLQDTSLGNEW 190
>08_01_0310 + 2714773-2715309,2716426-2716650
Length = 253
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +3
Query: 183 SSTWWNNVQM----GPPDVILGITEAYKRTHI 266
+S WW++ +M G P TEA+K+THI
Sbjct: 109 TSEWWDHFRMNKAEGQPITWAEFTEAFKKTHI 140
>06_01_1059 + 8512335-8513444
Length = 369
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +3
Query: 183 SSTWWNNVQM----GPPDVILGITEAYKRTHI 266
+S WW++ +M G P TEA+K+THI
Sbjct: 109 ASEWWDHFRMNRADGQPITWAEFTEAFKKTHI 140
>05_03_0623 -
16307969-16308323,16308428-16308482,16309413-16309509,
16309587-16309592
Length = 170
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 263 VCPLVCFCNA*DYIWRTHL 207
+CP++C NA +IW HL
Sbjct: 40 ICPIICDANAKRFIWFPHL 58
>03_02_1028 - 13444284-13445381
Length = 365
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +3
Query: 183 SSTWWNNVQM----GPPDVILGITEAYKRTHI 266
+S WW++ +M G P TEA+K+THI
Sbjct: 109 ASEWWDHFRMNRAEGQPITWAEFTEAFKKTHI 140
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 75 VLDSFVKMAQVLKKLTTQVLKPNNVDTIVGCTGLRASSTWWNNV 206
V DSFV + VL++ + + V + G TGL + +T W ++
Sbjct: 579 VADSFVDIVGVLRETWSTLSSLYQVGSASGSTGLASETTIWGSL 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,873,218
Number of Sequences: 37544
Number of extensions: 532973
Number of successful extensions: 1285
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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