Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20219
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)                72   6e-13
SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)           61   8e-10
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)               30   1.7  
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                29   4.0  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  29   4.0  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   4.0  
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 28   9.1  
SB_49861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
 Frame = +2

Query: 254 EDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTD 418
           +D  P K+NLGVGAYRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++D
Sbjct: 27  KDKDPSKINLGVGAYRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSD 85

Query: 419 AVAKLAFGEDSPVI 460
           A  KL  G D P I
Sbjct: 86  AACKLLLGGDHPAI 99



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
 Frame = +2

Query: 296 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 460
           YRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 106 YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 164

Query: 461 KNKSNCTVQTLSGTGA 508
                C +Q++SGTG+
Sbjct: 165 AQNRVCGIQSISGTGS 180



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +1

Query: 514 LGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPH-KKYRYFDPKTNGFDLQGALEDI 690
           LGL+F+ + Y   K  ++  PTWGNH +    +     ++YRY+  +T   D     ED+
Sbjct: 183 LGLKFLYQFY-NCKTAYISKPTWGNHLKTLKAVGFTDIREYRYYKAETCSVDFDAMWEDL 241

Query: 691 SKFPKVPYSVA-RVAHNP 741
            K P+    V    AHNP
Sbjct: 242 EKAPEGSIIVLHECAHNP 259


>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +2

Query: 245 SIQEDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEE 352
           + + DT+PKK+NLGVGAYRDD GKP+VLPSV+KA +
Sbjct: 69  AFKRDTNPKKMNLGVGAYRDDTGKPYVLPSVKKASD 104



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +3

Query: 162 GCTGLRASSTWWNNVQMGPPDVILGITEAYKRTHILKK 275
           G   +R SS WW++V+ GPPD ILG+TEA+KR    KK
Sbjct: 42  GYAAVRLSS-WWSHVEAGPPDAILGVTEAFKRDTNPKK 78


>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
 Frame = +2

Query: 296 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 460
           YRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 2   YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 60


>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
          Length = 299

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +2

Query: 287 VGAY-RDDEGKPFVLPSVRKAEEILHSRGLNHEYAPI--SGEATYTDAVAKLAFGEDSPV 457
           VGA+ R  +G    L +  K E+ +  +   H+ A I  +  AT++  V+ +   +   +
Sbjct: 86  VGAHKRVLDGTEHKLSTFYKHEKYVGGKDKKHDLALIKLAKPATFSTKVSPVCLPKQGDL 145

Query: 458 IKNKSNCTVQTLSGTGASALDSS 526
           +K + NC     S  G +AL S+
Sbjct: 146 MKERENCFATGKSANGKTALTSN 168


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 161 WLYRP*SQQ--HLVEQCSDGSARCNLRHYRSIQEDTHPKKVNLGVGAYRDDEGKPFVLPS 334
           W Y   S Q  HL +    G   C+   Y   +ED    + NLGV AYR     P +LP 
Sbjct: 65  WDYLTHSHQFSHLFKN-QTGDVACD--SYHKYKEDVQLLR-NLGVKAYRFSISWPRILP- 119

Query: 335 VRKAEEILHSRGLNH 379
            +  +EI++++G+ +
Sbjct: 120 -KGTKEIINTKGIEY 133


>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 529 ITKHYAKAKEIWLPTPTWGNHPQICN 606
           +T   AK   +WL  P++GN PQ  N
Sbjct: 92  VTHRSAKESRLWLSEPSYGNWPQQLN 117


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -1

Query: 397  TDGSILMIESSTME---NFFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLYASV 239
            +D  I++    +M+   +F+ L+ R+ +++FSL  ++ +++K  + R+C  ++  V
Sbjct: 1127 SDPDIIVFTGYSMQRVVHFYSLAQRKHSRYFSLAQALSNDSKSGYRRVCAFVHQVV 1182


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 336 TEGKTNGFPSSSLYAPTPRFTFL 268
           ++ KT GF SSS   P PRF F+
Sbjct: 377 SQEKTKGFDSSSWMKPNPRFMFM 399


>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +3

Query: 294 HIEMMRENHLFCLLSERQKKFSIVEDSIMSMLPSVVRPHILML*LNW 434
           H++  R  H++ L  +  ++ S+ + S+   LP  + P  ++  ++W
Sbjct: 112 HLKQGRGKHVYRLFLDAMRRLSMYQRSVRLFLPRAILPMHMLTRIHW 158


>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 188 HLVEQCSD-GSARCNLRHYRSIQEDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAE 349
           H   +C+  G  +C  RH+ S+  D     +  G     D++  P ++P V K +
Sbjct: 345 HRENKCNGRGCYKCKARHHTSLCHDKQHNAMLSGFTPTSDEKNLPAIIPVVIKGQ 399


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -1

Query: 478 TVALIFDDRAVFSKSQFSYSISICGLTTDGSILMIESSTMENF----FCLSDRRQNKWFS 311
           TV L   D  +F          +     D S+L++ + ++E F    F +  R   KWF 
Sbjct: 219 TVDLYIADEWLFGAFMCKTVTFLQNTVLDASVLILLTISIEKFTVVCFPIQSRFYRKWFR 278

Query: 310 LIISIC 293
            I+ +C
Sbjct: 279 YIVGVC 284


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -1

Query: 478 TVALIFDDRAVFSKSQFSYSISICGLTTDGSILMIESSTMENF----FCLSDRRQNKWFS 311
           TV L   D  +F          +     D S+L++ + ++E F    F +  R   KWF 
Sbjct: 131 TVDLYIADEWLFGAFMCKTVTFLQNTVLDASVLILLTISIEKFTVVCFPIQSRFYRKWFR 190

Query: 310 LIISIC 293
            I+ +C
Sbjct: 191 YIVGVC 196


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 492 SVCTVQLLLFLMTGLSSPKASLATASVYVASPLM 391
           ++CTV +L+ + T L   K S+    +YV SPL+
Sbjct: 153 AICTVTILVGVFTPLIPLKISVTLFLIYVFSPLL 186


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 302 DDEGKPFVLPSVRKAEEILHSRGLNHEYAPISGEA 406
           D + KP     + + +E +H++ + H+YA  SGE+
Sbjct: 171 DIDQKPTANSKMDEKKEFIHAKYIKHQYAQKSGES 205


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 489 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 391
           +CTV + L   T L   K SL   S+Y+  PL+
Sbjct: 680 ICTVTMSLGFFTPLIPGKISLTLFSIYILLPLL 712


>SB_49861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 242 RSIQEDTHPKKVNLGVGAYRDDEGKPFV 325
           R I++DT+PK++ L  G    ++ +P++
Sbjct: 211 REIEQDTNPKRLKLKAGILSKNQSQPYL 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,010,992
Number of Sequences: 59808
Number of extensions: 601477
Number of successful extensions: 1557
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)