Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20219
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.2  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 88 KLSNTGKIITNYVVLLKDE 32
          ++   G+I+TNY+  + DE
Sbjct: 32 RILQNGRILTNYIKCMLDE 50


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 442 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 338
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 513 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 442 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 338
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 481 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 515


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 88 KLSNTGKIITNYVVLLKDE 32
          ++   G+I+TNY+  + DE
Sbjct: 32 RILQNGRILTNYIKCMLDE 50


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 283 KIYFFRMCVLLYASVMPKITSGGPI 209
           K++  R   +  ASV P++ SG P+
Sbjct: 566 KVHGIRGLRVADASVQPQVISGNPV 590


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 705 LREF*Y-ILECSLQIET 658
           L+E  Y I+ECSL +ET
Sbjct: 144 LKEMFYLIIECSLNLET 160


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 419 AVAKLAFGEDSPVIKNKSNCTVQTLSGTGASALDSSS 529
           AVA  AFG  S ++    +    + +   A+A+D+++
Sbjct: 106 AVAAAAFGATSSMVPGFGSTAASSAALAAAAAVDAAT 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,090
Number of Sequences: 438
Number of extensions: 5538
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)