Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20218
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   7.4  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   7.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.8  

>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 561 SENFLGL-WIFMYFLCTNCL 505
           S   LG+ W+F+ FLC +CL
Sbjct: 28  SNAILGIAWLFLIFLCCSCL 47


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 281 VQPICLEHLYLNSLL*YYFISSIHNLWFSFERSLLNTLLSMFILSFR--PDVYFLFLY 114
           + P     L L   L  +F   +  L FSF  S L  L  +FI+ F   P ++FLF +
Sbjct: 102 LHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFF 159


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 425 SRQVVSQPLNTPNLRRQINNKRRFVGNKQLVHKK 526
           S  + + P+  PNLR + +NK R   +++L   K
Sbjct: 18  SESITNSPVFIPNLRSKSDNKHRLNTSEELPFTK 51


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 520 QKIHKNPQPQKILRT 564
           QKIH+NPQP++  R+
Sbjct: 125 QKIHRNPQPRRRRRS 139


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 230 YFISSIHNLWFSFERSLLNTLLSMFILSFRPDVYFLFLYDF 108
           +F   IH+L F + +      + M  LSF  + +FLF + F
Sbjct: 43  FFEGGIHSLLFFYPKRNWWFFIKMRYLSFFFEFFFLFSFAF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,110
Number of Sequences: 5004
Number of extensions: 42460
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)