Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20218
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)        32   0.48 
SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.84 
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)                29   4.5  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                28   7.9  

>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
          Length = 372

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 144 KRQNKHGKQGVQQGPLKAKPQVMDARNKIISKKRIQIQMLETNWLNLQ 287
           K+  K  K+ ++   +KAK    ++ NK + KK+ Q+Q LE     L+
Sbjct: 194 KKTVKEAKKELKALRVKAKESKSESNNKAVEKKKAQVQRLEEQLFKLE 241


>SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 135 IRSKRQNKHGKQGVQQGPLKAKPQVMDARNKIISKKRIQIQMLET 269
           + +   N+  ++G+++  +K   ++MD   K+   +R++ + LET
Sbjct: 68  VHNSEMNEEARKGLEESEMKGDEKIMDLEAKLKEMERVEKETLET 112


>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +2

Query: 287 KQRDARLKLEHLKMQRRGQMTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTPNL 466
           +Q     KLE LK ++          PKA +  + +   ++   D   ++  + + T +L
Sbjct: 133 RQYQLEFKLEGLKEEKMMLEREYGRMPKAGEIEKQLKEVNKSVEDLKIEIAQRTVETKSL 192

Query: 467 RRQINNKRRFV 499
           R ++ N+++ V
Sbjct: 193 REELENRQKLV 203


>SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)
          Length = 468

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 368 KATKFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQINNKRRFVGNK---QLVHKKY 529
           KA+       NK +V  DT+R+   +P     +  ++NNK   +G K    L+H+ Y
Sbjct: 325 KASNGATVQSNKGQVPKDTTRKKTRKPFANHRIGERMNNKHEGIGLKIITPLLHELY 381


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 485 KRRFVGNKQLVHKKYIKIHN 544
           KRRF+  K L+H K IKI N
Sbjct: 82  KRRFLAPKLLIHSKAIKIKN 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,373
Number of Sequences: 59808
Number of extensions: 298096
Number of successful extensions: 926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)