Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20218
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical...    29   3.9  
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    29   3.9  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    29   3.9  

>Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 536 FLCIFCVPTVYFLQIYV 486
           F CI+ +PTV FL +YV
Sbjct: 161 FSCIYAIPTVIFLPVYV 177


>AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 536 FLCIFCVPTVYFLQIYV 486
           F CI+ +PTV FL +YV
Sbjct: 161 FSCIYAIPTVIFLPVYV 177


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 268 QIG*TCKAEGC*TEARTSQNAKK-RTNDTCKCFSKGHQIYSNCCQQR*SVHRYIQASCLT 444
           QIG  C+  GC TE   S+N +  + +     F +G + +S C ++  +   +++    T
Sbjct: 147 QIGAPCRNNGCSTEFDGSKNKENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCT 206

Query: 445 ASEH 456
           + EH
Sbjct: 207 SGEH 210


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 268 QIG*TCKAEGC*TEARTSQNAKK-RTNDTCKCFSKGHQIYSNCCQQR*SVHRYIQASCLT 444
           QIG  C+  GC TE   S+N +  + +     F +G + +S C ++  +   +++    T
Sbjct: 147 QIGAPCRNNGCSTEFDGSKNKENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCT 206

Query: 445 ASEH 456
           + EH
Sbjct: 207 SGEH 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,793
Number of Sequences: 27780
Number of extensions: 237469
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)