Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20218
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   6.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 427 GCICEHSIFVDNSSSKFG 374
           GCIC  + F D    +FG
Sbjct: 78  GCICRKTSFKDLWDKRFG 95


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 524 FCVPTVYFLQIYVY 483
           F +P +YF  +++Y
Sbjct: 663 FTIPNMYFKDVFIY 676


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 524 FCVPTVYFLQIYVY 483
           F +P +YF  +++Y
Sbjct: 663 FTIPNMYFKDVFIY 676


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 279  NLQSRGMLD*S*NISKCKEEDK*HL*MFFQRPPNLLELLSTKIECSQI 422
            NLQS+   D +  +   +  DK H  +  Q PP+   L  T    S I
Sbjct: 1373 NLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSI 1420


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 279  NLQSRGMLD*S*NISKCKEEDK*HL*MFFQRPPNLLELLSTKIECSQI 422
            NLQS+   D +  +   +  DK H  +  Q PP+   L  T    S I
Sbjct: 1369 NLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSI 1416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,340
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)