Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20218
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31650.1 68417.m04495 transcriptional factor B3 family protei...    29   2.8  
At5g50190.1 68418.m06215 hypothetical protein similar to unknown...    29   3.7  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    28   6.4  

>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 493

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 20  PYLPIFFRRLFHIPNSNINYVV-FDRNELRGNHKEKENKHQV*TTK*TWKARCSART 187
           P  P FF+ L     S+IN  V F    ++G H+ K  K +  ++K TWK +    T
Sbjct: 9   PKSPHFFQPLLPGFKSHINIPVKFFSKYIKGKHEGKTVKLRSDSSKRTWKVKIEGHT 65


>At5g50190.1 68418.m06215 hypothetical protein similar to unknown
           protein (pir||T08985)
          Length = 215

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 180 QGPLKAKPQVMDARNKIISKKRIQIQMLETNWLNLQSR 293
           + P+K K ++M+ RN++I + R +++M     L +++R
Sbjct: 31  ENPVKQKERLMNFRNRLILELREEVEMQRKRSLEVETR 68


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 236 KEENSDTDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNVFPKATKFTRTVVNKDRV 412
           KEE     A+D   E  K++D+  K+EH K   +G+   V  F +  +     V++D +
Sbjct: 427 KEEVEKEKAKDTKKEKGKEKDSEKKMEHEK--EKGKSLDVANFERLLQRLPGCVSRDLI 483


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,331
Number of Sequences: 28952
Number of extensions: 207953
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)