Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20217
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 704 VCQFNRSLGFFCDCTSKSN 648
           VC+ +   G+ CDC S +N
Sbjct: 390 VCRISDGGGYICDCPSGTN 408


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 219 LLFVASSFN*FHKFCFITIILNYSSKII*LHL 314
           LL  A SF    +  F+  +L  S KI+ LHL
Sbjct: 245 LLMFAVSFLIITQVIFVICVLVQSEKIVWLHL 276


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 614 QTNYQTIIMARHLILRCSHRKILMSD*IDRLLNAYPYTHLS 736
           Q+  + +++ R   L    ++   S     +LN Y Y+HLS
Sbjct: 214 QSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLS 254


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 216 YLLFVASSFN*FHKFCFITIILNYSSKII*LHLFLGKFKLNLILMMKS 359
           Y L +   +N  + FC I + LN +   I  +L   KF+   I+  +S
Sbjct: 322 YHLEIEKYYNILY-FCRIMVYLNSAINPILYNLMSSKFRTGFIICSES 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,051
Number of Sequences: 336
Number of extensions: 3032
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)