Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20217
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.8  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 249 FHKFCFITIILNYSSKII*LHLFLGKFKLNLIL-MMKSVLNRMHSVTEQKL 398
           F   CF+ I       I  +  +LGKF ++LI+ ++ +++N+  S    K+
Sbjct: 249 FTILCFMQIFCINWDGIARIQFYLGKFDISLIMALISAIINKTASQNSIKI 299


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 133 LNLKYSEILVLIKFWNVCKTISWILLICAVRYPYVISSRKKPR 5
           LNL   ++L +I F  +C  +   LL+  +R+P +    KKPR
Sbjct: 346 LNLPIYQVLNII-FAVICPIV---LLLTLIRFPSLYEQLKKPR 384


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 423 NINLTVFLTVSAQSH-CAFCLKQTSS*ELNLI*ICPK 316
           N+ L V    S + H CA C++Q    E N+  +C K
Sbjct: 68  NMRLKVGTCESCKKHTCAICIRQCHKCESNVCSMCSK 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,094
Number of Sequences: 5004
Number of extensions: 46976
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)