Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20217
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0568 - 4184544-4184665,4185386-4185575                           43   2e-04
11_01_0187 - 1474695-1474774,1475183-1475456                           38   0.009

>02_01_0568 - 4184544-4184665,4185386-4185575
          Length = 103

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 11  FLPGAYHIRIAYCAYKQYPGYSFTDIP 91
           F+PG Y+ RIAY AYK Y G+SF++IP
Sbjct: 75  FIPGFYYTRIAYYAYKGYKGFSFSNIP 101


>11_01_0187 - 1474695-1474774,1475183-1475456
          Length = 117

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 11  FLPGAYHIRIAYCAYKQYPGYSFTDIPEF 97
           FLPG Y  R+AY + +  PGY+F  IP++
Sbjct: 89  FLPGFYETRVAYYSSRGAPGYTFASIPDY 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,670
Number of Sequences: 37544
Number of extensions: 244624
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)