Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20217
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-7|AAS19859.1|  168|Caenorhabditis elegans Hypothetical pr...    35   0.071
Z77670-2|CAB01250.1|  588|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AJ512335-1|CAD54509.1|  588|Caenorhabditis elegans trehalase pro...    29   4.7  

>U88175-7|AAS19859.1|  168|Caenorhabditis elegans Hypothetical
           protein F21F3.7 protein.
          Length = 168

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  FLPGAYHIRIAYCAYKQYPGYSFTDIPEFD 100
           F+PG YH+    C     PGYSF  +P F+
Sbjct: 138 FIPGFYHVYYVTCTLCGRPGYSFDKLPTFN 167


>Z77670-2|CAB01250.1|  588|Caenorhabditis elegans Hypothetical
           protein W05E10.4 protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 578 HSCD--NPNISSMYCSTPLLVIVTRHSL 501
           H CD  N N S +YC+ P+L  V  HSL
Sbjct: 27  HVCDTTNSNNSFIYCNGPILDAVNYHSL 54


>AJ512335-1|CAD54509.1|  588|Caenorhabditis elegans trehalase
           protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 578 HSCD--NPNISSMYCSTPLLVIVTRHSL 501
           H CD  N N S +YC+ P+L  V  HSL
Sbjct: 27  HVCDTTNSNNSFIYCNGPILDAVNYHSL 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,859
Number of Sequences: 27780
Number of extensions: 258202
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)