Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20217
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29850.1 68417.m04249 expressed protein contains Pfam PF05915...    43   2e-04
At2g19350.1 68415.m02258 expressed protein                             43   2e-04
At3g29170.1 68416.m03655 expressed protein contains Pfam PF05915...    34   0.088
At3g57200.1 68416.m06368 hypothetical protein                          29   2.5  
At1g78060.1 68414.m09096 glycosyl hydrolase family 3 protein sim...    28   5.8  
At1g04650.1 68414.m00462 hypothetical protein                          28   7.7  

>At4g29850.1 68417.m04249 expressed protein contains Pfam PF05915:
           Eukaryotic protein of unknown function (DUF872)
          Length = 103

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 11  FLPGAYHIRIAYCAYKQYPGYSFTDIP 91
           F+PG Y+ RIAY AYK Y G+SF++IP
Sbjct: 75  FIPGFYYTRIAYYAYKGYKGFSFSNIP 101


>At2g19350.1 68415.m02258 expressed protein
          Length = 103

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 11  FLPGAYHIRIAYCAYKQYPGYSFTDIP 91
           F+PG Y+ RIAY AYK Y G+SF++IP
Sbjct: 75  FIPGFYYTRIAYYAYKGYKGFSFSNIP 101


>At3g29170.1 68416.m03655 expressed protein contains Pfam PF05915:
           Eukaryotic protein of unknown function (DUF872)
          Length = 121

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  FLPGAYHIRIAYCAYKQYPGYSFTDIPEF 97
           FLPG Y  RIAY +++   GY F  IP +
Sbjct: 93  FLPGFYETRIAYYSWRGAEGYRFAAIPSY 121


>At3g57200.1 68416.m06368 hypothetical protein
          Length = 504

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = +1

Query: 496 KPRLCLVTITSKGVEQ-----YIEEILGLS 570
           KPR+C+ T TS G+EQ     Y  +++G+S
Sbjct: 113 KPRICITTSTSAGLEQTLPWIYFHKVIGVS 142


>At1g78060.1 68414.m09096 glycosyl hydrolase family 3 protein
           similar to xylosidase GI:2102655 from [Aspergillus
           niger]
          Length = 767

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 587 PVPHSCDNPNISS---MYCSTPLLVIVTRHSLGLLLTVANNINNILNHA 450
           P PHSCD  N ++    +C T L +      L   LT+   I+ ++N A
Sbjct: 21  PPPHSCDPSNPTTKLYQFCRTDLPIGKRARDLVSRLTIDEKISQLVNTA 69


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 ISLSLFSDYLLFVASSFN*FHKFCFIT 272
           I   L  DYL F ASSF    K CF+T
Sbjct: 70  IFFQLLLDYLRFSASSFTAIGKTCFMT 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,006
Number of Sequences: 28952
Number of extensions: 223218
Number of successful extensions: 361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)