Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20216
(733 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q16UN6 Cluster: Cap binding protein; n=2; Culicidae|Rep... 118 1e-25
UniRef50_Q09161 Cluster: Nuclear cap-binding protein subunit 1; ... 93 5e-18
UniRef50_Q6GQ80 Cluster: Nuclear cap-binding protein subunit 1-A... 89 1e-16
UniRef50_O01763 Cluster: Putative uncharacterized protein; n=2; ... 65 1e-09
UniRef50_Q5BYT9 Cluster: SJCHGC09625 protein; n=1; Schistosoma j... 63 8e-09
UniRef50_Q2HUL1 Cluster: Initiation factor eIF-4 gamma, middle; ... 49 1e-04
UniRef50_Q8VZH3 Cluster: At2g13540/T10F5.8; n=5; Magnoliophyta|R... 47 5e-04
UniRef50_Q55D17 Cluster: Putative uncharacterized protein; n=1; ... 47 5e-04
UniRef50_Q015L6 Cluster: Nuclear cap-binding protein CBP80; n=3;... 42 0.012
UniRef50_A2XGM5 Cluster: Putative uncharacterized protein; n=2; ... 34 3.1
UniRef50_Q7S6G6 Cluster: Predicted protein; n=1; Neurospora cras... 33 5.5
UniRef50_Q4V551 Cluster: IP13758p; n=2; Drosophila melanogaster|... 33 7.2
>UniRef50_Q16UN6 Cluster: Cap binding protein; n=2; Culicidae|Rep:
Cap binding protein - Aedes aegypti (Yellowfever
mosquito)
Length = 813
Score = 118 bits (284), Expect = 1e-25
Identities = 56/87 (64%), Positives = 67/87 (77%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LE+LILRVG VLE+DL FR KILRIL++C I+MPEKCTIY+T+V
Sbjct: 34 LETLILRVGENSSSSLESNLEGLVSVLESDLGNFRSKILRILSECPIKMPEKCTIYSTMV 93
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLK 512
GL+NAKNYNFGGEFVD++VKTFKE+LK
Sbjct: 94 GLMNAKNYNFGGEFVDHMVKTFKESLK 120
Score = 62.1 bits (144), Expect = 1e-08
Identities = 26/49 (53%), Positives = 31/49 (63%)
Frame = +2
Query: 518 KWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
+W+AARY LRF++DLVNCH D+ANED VP VRRDW
Sbjct: 123 RWDAARYALRFLSDLVNCHVISTNSLLQLLDNMVDAANEDSVPQVRRDW 171
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/34 (61%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = +1
Query: 157 MNRRRGHDDE-EGYERLHRKRRRVSENQEIEDRL 255
MNRRR ++D+ + Y RKRRRVSENQE+E+RL
Sbjct: 1 MNRRRAYEDDGDFYGERSRKRRRVSENQEMEERL 34
>UniRef50_Q09161 Cluster: Nuclear cap-binding protein subunit 1;
n=33; Eumetazoa|Rep: Nuclear cap-binding protein subunit
1 - Homo sapiens (Human)
Length = 790
Score = 93.5 bits (222), Expect = 5e-18
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 31 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 91 GLLNARNYNFGGEFVEAMIRQLKESLKANN 120
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH E+ VP VRRDW
Sbjct: 117 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDW 168
>UniRef50_Q6GQ80 Cluster: Nuclear cap-binding protein subunit 1-A;
n=7; Deuterostomia|Rep: Nuclear cap-binding protein
subunit 1-A - Xenopus laevis (African clawed frog)
Length = 791
Score = 88.6 bits (210), Expect = 1e-16
Identities = 45/87 (51%), Positives = 57/87 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI RVG VLEADL ++ KILRIL A +PEK ++Y+TLV
Sbjct: 31 LESLICRVGEKSTSSLESNLEGLAGVLEADLPNYKSKILRILCFVARLLPEKMSVYSTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLK 512
GLLNA+NYNFGGEFV+ +++ KE +K
Sbjct: 91 GLLNARNYNFGGEFVEAMIRHLKETIK 117
Score = 39.9 bits (89), Expect = 0.063
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K+ ++ A Y +RF++DLVNCH E+ +P VR DW
Sbjct: 117 KLNAYSEAVYLVRFLSDLVNCHVIAAPSMVAMFESFVGVTQEEDIPQVRSDW 168
Score = 32.7 bits (71), Expect = 9.5
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +1
Query: 157 MNRRRGHDDEEGYERLHRKRRRVSENQEIEDRL 255
M+RRR H DE + H KRR+ SE EIEDRL
Sbjct: 1 MSRRR-HSDENDGGQAH-KRRKTSEPLEIEDRL 31
>UniRef50_O01763 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 798
Score = 65.3 bits (152), Expect = 1e-09
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
L+ +I +VG L DL +R I+ I+ CAI +P + T+Y TLV
Sbjct: 31 LQGVIGKVGENTGSSIECNLDKLTAFLHDDLEKYRASIIDIIAGCAIYLPNRVTVYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIV 488
GLLN+KN+NFGG+ V+ ++
Sbjct: 91 GLLNSKNFNFGGDVVEKLI 109
>UniRef50_Q5BYT9 Cluster: SJCHGC09625 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09625 protein - Schistosoma
japonicum (Blood fluke)
Length = 192
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +3
Query: 249 SLESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATL 428
++ESLI R+G V+ AD+ +L++L++C +PE+ IYATL
Sbjct: 59 TIESLIYRIGFKDLSNIERDIGELASVILADIPKNGESLLKVLSNCVKNVPERILIYATL 118
Query: 429 VGLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
VGLLN KN +F G+ ++ + + K+ ++S +
Sbjct: 119 VGLLNLKNRSFVGQLIELLQRDLKDAIRSAS 149
>UniRef50_Q2HUL1 Cluster: Initiation factor eIF-4 gamma, middle;
n=3; core eudicotyledons|Rep: Initiation factor eIF-4
gamma, middle - Medicago truncatula (Barrel medic)
Length = 887
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +3
Query: 327 VLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKEN 506
VL +L + +IL L CA ++P K Y TL+GL+N +N +F V+ F++
Sbjct: 34 VLRRELDNSQTEILEFLLTCAEQLPHKIPFYGTLIGLINLENEDFVKRLVEQTRSKFQDA 93
Query: 507 LKSGN 521
L +GN
Sbjct: 94 LDTGN 98
>UniRef50_Q8VZH3 Cluster: At2g13540/T10F5.8; n=5; Magnoliophyta|Rep:
At2g13540/T10F5.8 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 848
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/65 (33%), Positives = 37/65 (56%)
Frame = +3
Query: 327 VLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKEN 506
V+ ++ ++L L CA ++P K +Y TL+GLLN +N +F + V+ + F+
Sbjct: 34 VIRREIERSGDQVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHANFQVA 93
Query: 507 LKSGN 521
L SGN
Sbjct: 94 LDSGN 98
>UniRef50_Q55D17 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 772
Score = 46.8 bits (106), Expect = 5e-04
Identities = 30/82 (36%), Positives = 37/82 (45%)
Frame = +3
Query: 243 RGSLESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYA 422
+ L SLI+R+G L AD+ I IL C + K IYA
Sbjct: 37 KSKLTSLIVRIGDKATSSLESNIDALANALLADIPKQSSLIQDILFKCVSSLTYKTPIYA 96
Query: 423 TLVGLLNAKNYNFGGEFVDYIV 488
TLVGL+N KN FG E V +V
Sbjct: 97 TLVGLINVKNSEFGKEVVCRLV 118
>UniRef50_Q015L6 Cluster: Nuclear cap-binding protein CBP80; n=3;
Ostreococcus|Rep: Nuclear cap-binding protein CBP80 -
Ostreococcus tauri
Length = 804
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 381 DCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
+C +P K +YATLVGL+NA FGG V+ +E L G+
Sbjct: 65 ECVTELPVKTPVYATLVGLINATAGEFGGRVVEETKTALEEALNGGD 111
>UniRef50_A2XGM5 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 1055
Score = 34.3 bits (75), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 369 RILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
+ L CA ++P K + L+GL+N +N +F VD ++ L + N
Sbjct: 188 KFLLQCADQLPHKIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNEN 238
>UniRef50_Q7S6G6 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 434
Score = 33.5 bits (73), Expect = 5.5
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 115 REKSKICDTHSDFIMNRRRGHDDEEGYERLHRKRRRVSENQEIEDRLSP*F*ELAK 282
R+++ +HSDF R G D+EE +ER ++R++ E + + +S ELAK
Sbjct: 363 RQEAVASRSHSDFSRKRIAG-DEEEAFERAEKRRKKEEEEKAKKAGVSRGVKELAK 417
>UniRef50_Q4V551 Cluster: IP13758p; n=2; Drosophila
melanogaster|Rep: IP13758p - Drosophila melanogaster
(Fruit fly)
Length = 753
Score = 33.1 bits (72), Expect = 7.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 363 ILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENL 509
++ L C P + + YATLVGL+N ++ FG E + ++ E++
Sbjct: 68 LINELVICLGYYPGQASAYATLVGLINVADFEFGSECLLFMAHKVGESV 116
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,946,525
Number of Sequences: 1657284
Number of extensions: 12701577
Number of successful extensions: 34322
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34303
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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