Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20216
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 33 0.042
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 30 0.39
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 29 0.68
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 28 1.2
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 28 1.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 2.1
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 27 3.6
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 27 3.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.6
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 4.8
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 26 4.8
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 4.8
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 4.8
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 26 6.4
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.4
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.4
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 33.1 bits (72), Expect = 0.042
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 309 GYSPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFFIIM 175
G++ +WNYF + + + FRY T A+IS F+++
Sbjct: 155 GFAVSWNYFINYFVTFPLELTTCAITFRYWTDINSAAWISIFLVV 199
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 309 GYSPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFFII 178
G++ WNYF + + + FRY T A+I+ F++
Sbjct: 162 GFAVGWNYFMNYFVTFPLELTTCAITFRYWTDINSCAWITIFLV 205
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.1 bits (62), Expect = 0.68
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -2
Query: 309 GYSPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFFIIM 175
G++ +WNYFF + + + F + T +IS F+++
Sbjct: 155 GFAVSWNYFFNYFVTFPFELTTCAITFTFWTDVNCAVWISIFLVV 199
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -2
Query: 309 GYSPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFFI 181
G++ +WNYF + + + F++ T A+IS F+
Sbjct: 155 GFAVSWNYFLNYFVTCPLELTTCAITFKFWTEINSAAWISIFL 197
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 312 LGYSPNWNYFFRQLLKLRTQAILDFLVFRYTTP-FPMEAFISFFIIM 175
LG++ WNYFF+ + T +V Y P + +++ F+++
Sbjct: 123 LGFATGWNYFFKYAIVYPTNLTAVGIVIHYWRPDLNVGIWVAVFLVV 169
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 444 AKNYNFGGEFVDYIVKTFKENLKSGN 521
AK N GEF+DYI+ +K ++S N
Sbjct: 272 AKTQNDLGEFLDYIISNYKVPIESLN 297
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 407 FLGHADSTIR*YP*YFNSKGTQIGFQY 327
FL ++D R Y + N T+IGFQY
Sbjct: 45 FLSNSDPAARMYADWTNKTCTEIGFQY 71
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 SKICDTHSDFIMNRR-RGHDDEEGYERLHRKRRRVSENQEIE 246
SK +T D I N + H+DEE +++ R+R +E +E
Sbjct: 8 SKSGNTGKDLISNNEAKNHEDEETHQKKRRRRTTDAEATLLE 49
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = -2
Query: 303 SPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFFIIMSSTTVHNKITVRITNL* 124
S +WN+ F QAI +F +T P+ IS I + S +K + NL
Sbjct: 792 SLDWNFAFIHSKSAENQAISAIFMFLHTVGAPILTCIS--IPLFSFEPLSKKNRFLINLF 849
Query: 123 LFSLCFCLRNRIL 85
FS F L N ++
Sbjct: 850 RFSFSFILYNLLI 862
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 324 LLILLGYSPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFF 184
++I L +P W YF + + A +D + F TPF F S F
Sbjct: 280 MVISLIIAPLWIYFTFKYITTCIHANIDIVHFYLETPFLAGIFSSIF 326
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 412 VHFSGMRIAQSVSIRSILTLKVLKSASST 326
VHF +R+A ++ ++ + +K+L S T
Sbjct: 141 VHFQTLRLASAIQLKKFIFVKILGIVSKT 169
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 4.8
Identities = 7/30 (23%), Positives = 19/30 (63%)
Frame = -1
Query: 712 YNSDQPKVMLTAPQIQPIPSDVRYSIFISR 623
YNS ++ + +P+P+D ++S+ +++
Sbjct: 566 YNSTYELILASLNTSEPVPADAKFSVIVAK 595
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 200 RSYPSSSSCPLRRFIIKSLCVSQIFDFSLYAFVYE 96
R P+S+ P+R + S+ S++ DF+ YA + E
Sbjct: 57 RLTPNSAFVPVRDSAVASISTSKVQDFNSYATLTE 91
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = -2
Query: 309 GYSPNWNYFFRQLLKLRTQAILDFLVFRYTTPFPMEAFISFFII 178
G++ +WNY F ++ + + ++ +Y T +++ FI+
Sbjct: 161 GFALSWNYVFSFIVTIPLELTTGTMMIKYWTNLNSGIWVTVFIV 204
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 492 FLLCNQQILHQSYNSLHSTNQQELHRL 412
F+ CNQ+ LH SLH + RL
Sbjct: 54 FVECNQESLHSIPGSLHLVPDASIERL 80
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 336 ADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNY-NF 461
AD+ FR K+L++++ + K +Y T + L + Y NF
Sbjct: 173 ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLALEDDDAYTNF 215
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 725 ILLFIQLRPTQGNADSTANTTNPF*REVLHLH*QNLLMSL-IKSAM-MKQPIRDSSP 561
ILL +Q PTQ + N + F + +L + NL + I+SA+ Q ++ S+P
Sbjct: 2123 ILLLLQSHPTQAEEEEDTNEADDFKQLLLSVIHDNLAAATNIESAICYLQIVKSSNP 2179
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 642 YLTSEGIGCICGAVSITLGWSELY 713
Y+TS+ G A S++ GW EL+
Sbjct: 375 YITSQNHGYAVDASSLSNGWKELF 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,441
Number of Sequences: 5004
Number of extensions: 59480
Number of successful extensions: 185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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