Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20216
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499...    33   0.18 
08_02_1084 - 24232968-24234779                                         30   2.2  
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613...    28   8.8  

>03_02_0984 +
           12947444-12947530,12949071-12949127,12949833-12949904,
           12950050-12950112,12950955-12951131,12951503-12951628,
           12951711-12951777,12952019-12952215,12952617-12952691,
           12954524-12954554,12954714-12954802,12955120-12955188,
           12955306-12955425,12955963-12956081,12956303-12956441,
           12956538-12957038,12957293-12957592,12957694-12957875,
           12958277-12958388,12958953-12959072
          Length = 900

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 375 LTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
           L  CA ++P K   +  L+GL+N +N +F    VD      ++ L + N
Sbjct: 31  LLQCADQLPHKIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNEN 79


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 115 REKSKICDTHSDFIMNRRRGHDDEEGYERLHRKRRRVSENQEIEDR 252
           R++ +  D   D    R R  DD + Y   HR R R SE  E  DR
Sbjct: 534 RDRDRERDRERDRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDR 579


>05_07_0095 -
           27659944-27660795,27660900-27661172,27661280-27661354,
           27661683-27661837,27661935-27662051,27662148-27662487
          Length = 603

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 212 FRWRRSYPSSSSCPL 168
           FRWRRS  SSSS PL
Sbjct: 15  FRWRRSTSSSSSSPL 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,701
Number of Sequences: 37544
Number of extensions: 338329
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)