Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20216
(733 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X80030-1|CAA56334.1| 790|Homo sapiens cap binding protein protein. 93 7e-19
D32002-1|BAA06769.1| 790|Homo sapiens nuclear cap binding prote... 93 7e-19
BC001450-1|AAH01450.1| 790|Homo sapiens nuclear cap binding pro... 93 7e-19
AL445531-3|CAI15431.1| 790|Homo sapiens nuclear cap binding pro... 93 7e-19
AL162385-8|CAI12861.1| 790|Homo sapiens nuclear cap binding pro... 93 7e-19
AB209233-1|BAD92470.1| 803|Homo sapiens nuclear cap binding pro... 93 7e-19
>X80030-1|CAA56334.1| 790|Homo sapiens cap binding protein protein.
Length = 790
Score = 93.5 bits (222), Expect = 7e-19
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 31 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 91 GLLNARNYNFGGEFVEAMIRQLKESLKANN 120
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH E+ VP VRRDW
Sbjct: 117 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDW 168
>D32002-1|BAA06769.1| 790|Homo sapiens nuclear cap binding protein
protein.
Length = 790
Score = 93.5 bits (222), Expect = 7e-19
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 31 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 91 GLLNARNYNFGGEFVEAMIRQLKESLKANN 120
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH E+ VP VRRDW
Sbjct: 117 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDW 168
>BC001450-1|AAH01450.1| 790|Homo sapiens nuclear cap binding
protein subunit 1, 80kDa protein.
Length = 790
Score = 93.5 bits (222), Expect = 7e-19
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 31 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 91 GLLNARNYNFGGEFVEAMIRQLKESLKANN 120
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH E+ VP VRRDW
Sbjct: 117 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDW 168
>AL445531-3|CAI15431.1| 790|Homo sapiens nuclear cap binding
protein subunit 1, 80kDa protein.
Length = 790
Score = 93.5 bits (222), Expect = 7e-19
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 31 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 91 GLLNARNYNFGGEFVEAMIRQLKESLKANN 120
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH E+ VP VRRDW
Sbjct: 117 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDW 168
>AL162385-8|CAI12861.1| 790|Homo sapiens nuclear cap binding
protein subunit 1, 80kDa protein.
Length = 790
Score = 93.5 bits (222), Expect = 7e-19
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 31 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 90
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 91 GLLNARNYNFGGEFVEAMIRQLKESLKANN 120
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH E+ VP VRRDW
Sbjct: 117 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDW 168
>AB209233-1|BAD92470.1| 803|Homo sapiens nuclear cap binding
protein subunit 1, 80kDa variant protein.
Length = 803
Score = 93.5 bits (222), Expect = 7e-19
Identities = 47/90 (52%), Positives = 59/90 (65%)
Frame = +3
Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
LESLI +VG VLEADL ++ KILR+L A +PEK TIY TLV
Sbjct: 44 LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 103
Query: 432 GLLNAKNYNFGGEFVDYIVKTFKENLKSGN 521
GLLNA+NYNFGGEFV+ +++ KE+LK+ N
Sbjct: 104 GLLNARNYNFGGEFVEAMIRQLKESLKANN 133
Score = 46.8 bits (106), Expect = 8e-05
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = +2
Query: 509 KVGKWNAARYCLRFIADLVNCHXXXXXXXXXXXXXXXDSANEDGVPHVRRDW 664
K +N A Y +RF++DLVNCH ED VP VRRDW
Sbjct: 130 KANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDW 181
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,213,319
Number of Sequences: 237096
Number of extensions: 1854509
Number of successful extensions: 3800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3794
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -