Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20216
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    65   4e-11
AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/79 (37%), Positives = 45/79 (56%)
 Frame = +3

Query: 252 LESLILRVGXXXXXXXXXXXXXXXXVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLV 431
           L+ +I +VG                 L  DL  +R  I+ I+  CAI +P + T+Y TLV
Sbjct: 31  LQGVIGKVGENTGSSIECNLDKLTAFLHDDLEKYRASIIDIIAGCAIYLPNRVTVYTTLV 90

Query: 432 GLLNAKNYNFGGEFVDYIV 488
           GLLN+KN+NFGG+ V+ ++
Sbjct: 91  GLLNSKNFNFGGDVVEKLI 109


>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 160 NRRRGHDDEEGYERLHRKRRRVSE--NQEIEDRLSP*F*ELAKKVVPV 297
           +RRRGH D++ + + H  +++ +E   Q++++  +    EL  +V  V
Sbjct: 201 SRRRGHKDDDDFGKRHEMKQKHAEELRQQLQEAKASKLKELTSRVEEV 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,418
Number of Sequences: 27780
Number of extensions: 322311
Number of successful extensions: 923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)