Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20216
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    47   1e-05
At4g36980.1 68417.m05240 expressed protein                             31   1.0  
At4g13420.1 68417.m02095 potassium transporter (HAK5) identical ...    29   2.4  
At5g44880.1 68418.m05503 hypothetical protein similar to unknown...    29   4.2  
At5g37010.1 68418.m04438 expressed protein                             28   5.6  
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243...    28   5.6  
At4g05290.1 68417.m00801 hypothetical protein similar to At3g243...    27   9.7  
At2g05564.1 68415.m00590 hypothetical protein                          27   9.7  

>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 37/65 (56%)
 Frame = +3

Query: 327 VLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKEN 506
           V+  ++     ++L  L  CA ++P K  +Y TL+GLLN +N +F  + V+ +   F+  
Sbjct: 34  VIRREIERSGDQVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHANFQVA 93

Query: 507 LKSGN 521
           L SGN
Sbjct: 94  LDSGN 98


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 136 DTHSDFIMNRRRGHDDEEGYERLHRK 213
           + + D I +RRRG  DEEG + +H++
Sbjct: 116 ERYRDLIKHRRRGFSDEEGLQHVHQE 141


>At4g13420.1 68417.m02095 potassium transporter (HAK5) identical to
           K+ transporter HAK5 [Arabidopsis thaliana]
           gi|7108597|gb|AAF36490; similar to high-affinity
           potassium transporter AtKUP1p [Arabidopsis thaliana]
           gi|2688979|gb|AAB88901; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 785

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 336 ADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYI 485
           ADL  F V+ ++I   C +  P   TIY      L    YN    F D I
Sbjct: 316 ADLGHFSVRAVQISFSC-VAYPALVTIYCGQAAYLTKHTYNVSNTFYDSI 364


>At5g44880.1 68418.m05503 hypothetical protein similar to unknown
           protein (pir||T00729)
          Length = 161

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 29  IENLFKAC*VCYRFFCSKRKIR 94
           I N++  C  CY FFCSK   R
Sbjct: 138 IHNIYNRCEECYIFFCSKEFCR 159


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 172 GHDDEEGYERLHRKRRRVSENQEIEDRLSP 261
           G +DEE   R+HR+R+R  E+     R +P
Sbjct: 156 GGEDEEAERRIHRQRQRGGESPRERRRRTP 185


>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
            At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886, At4g03300
          Length = 1113

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 362  NTTDTNGLCYPHAREMYNLCNSCWFVEC 445
            +T +   +CY  +R   NLCN C+   C
Sbjct: 1078 STPECTEMCYMRSRLFNNLCNQCYIWLC 1105


>At4g05290.1 68417.m00801 hypothetical protein similar to At3g24380,
           At5g36840, At5g35010, At3g42740, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 213

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 362 NTTDTNGLCYPHAREMYNLCNSCWFVEC 445
           +T +   +CY  +R   NLCN C+   C
Sbjct: 178 STPECAEMCYMRSRLFNNLCNQCYIWLC 205


>At2g05564.1 68415.m00590 hypothetical protein
          Length = 231

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 362 NTTDTNGLCYPHAREMYNLCNSCWFVEC 445
           +T +   +CY  +R   NLCN C+   C
Sbjct: 196 STPECAEMCYMRSRLFNNLCNQCYIWLC 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,893
Number of Sequences: 28952
Number of extensions: 296666
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)