Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20214
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    24   1.2  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    24   1.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   2.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.9  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   8.6  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 262 MPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGPGL 366
           M L     NV +LL M  +     +YS  +  PGL
Sbjct: 85  MSLKEKNPNVKILLSMGGWNEGSQKYSQVAANPGL 119


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 262 MPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGPGL 366
           M L     NV +LL M  +     +YS  +  PGL
Sbjct: 85  MSLKEKNPNVKILLSMGGWNEGSQKYSQVAANPGL 119


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 631 INTFLYLYLRHKQIFHCQDL 572
           I+TFL L+L H ++ + Q L
Sbjct: 229 ISTFLQLFLEHYEVINRQTL 248


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 631 INTFLYLYLRHKQIFHCQDL 572
           I+TFL L+L H ++ + Q L
Sbjct: 155 ISTFLQLFLEHYEVINRQTL 174


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 419 AVRGSSGNDTVIRQCQ*DSRFVTRTILGLADMPAPFL 529
           AV  ++ NDT + +     R V + +    D PAPFL
Sbjct: 501 AVSVATPNDTSLVR----GRLVAKPVADARDAPAPFL 533


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 358 DQLSSSCTPYNVRGRTASSVKPSHSSQMR 272
           D LSS CT  N + +  +     H +Q R
Sbjct: 68  DALSSGCTKCNQKQKETAEKVIRHLTQKR 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,124
Number of Sequences: 336
Number of extensions: 4175
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)