Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20214
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    56   4e-09
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    28   1.3  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   1.7  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    27   3.0  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.1  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
 Frame = +3

Query: 189 KEAKLDSPKVGIWSSLDCSLQQMGYASYLIWEECDGFTEDAVLPLT-LYGVQLLLNWSWT 365
           K+ K   P      +       MGYAS+L ++       +A    + LY  QL  N++W 
Sbjct: 43  KQPKFHPPASAFGPAWTLLYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWM 102

Query: 366 PIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAWL 509
           P+F+GL   KLA  ++ +L+G       ++  +  TA   L+PYLAWL
Sbjct: 103 PLFYGLAKPKLALADLGILTGLVGWLAKTWWPLAPTASKWLIPYLAWL 150



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +1

Query: 64  VMANWPALGSIILPNVGGWANGLFFAGQIRKDSSEKSWYDELKKPSWTPPKWVFGPAWTV 243
           +  NW    + ++P   GW  G  +  + RKD      Y+  K+P + PP   FGPAWT+
Sbjct: 11  ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60

Query: 244 LY 249
           LY
Sbjct: 61  LY 62


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = -3

Query: 505 QAKYGTSNKP--AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC-- 338
           Q  Y +  +P  A L T P+  V  T    +T++S   ++K++    +G+ ++L+ SC  
Sbjct: 120 QNLYASPAEPGTAPLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCAF 176

Query: 337 --TPYNVR 320
             TP+ +R
Sbjct: 177 VPTPFTIR 184


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 364 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 272
           +Q  LSS  T  NVR + A+ V+PS S   R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 405 IEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAWLICQLPFLL 533
           + I VL    +  TLSF SV+     L++    + +C +P++L
Sbjct: 202 LTILVLPLTVLILTLSFNSVSSENMFLMMTVQFFYVCGIPYIL 244


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +3

Query: 267 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 386
           ++++ ++C+GF+  + L         L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 193 KPSWTPPKWVFGPAWTVLYSRWDMPLTSSGRNVMV 297
           KPS T   WV G  W     ++D+ + ++G  V+V
Sbjct: 581 KPSPTRFAWVNGKFWAQWLRKFDIDIEATGPRVIV 615


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = -3

Query: 544 SSRCSKKGSWHISQAKYGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIG 365
           SS  S   S   S +   T+  P+   +  + S  ++++  S+  S ++S  S +     
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192

Query: 364 VQDQLSSSCTPYNVRGRTASSVKPSHSS 281
                SSS +  +      SS   SHSS
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,623
Number of Sequences: 5004
Number of extensions: 69389
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)